Upload README.md with huggingface_hub
Browse files
README.md
CHANGED
|
@@ -1,68 +1,72 @@
|
|
| 1 |
---
|
| 2 |
-
|
| 3 |
-
base_model: seyonec/ChemBERTa-zinc-base-v1
|
| 4 |
tags:
|
| 5 |
-
-
|
| 6 |
-
|
| 7 |
-
-
|
| 8 |
-
|
| 9 |
-
-
|
| 10 |
-
|
| 11 |
model-index:
|
| 12 |
-
- name: FLP-Test-v10
|
| 13 |
-
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 14 |
---
|
| 15 |
|
| 16 |
-
|
| 17 |
-
should probably proofread and complete it, then remove this comment. -->
|
| 18 |
-
|
| 19 |
-
# FLP-Test-v10
|
| 20 |
-
|
| 21 |
-
This model is a fine-tuned version of [seyonec/ChemBERTa-zinc-base-v1](https://huggingface.co/seyonec/ChemBERTa-zinc-base-v1) on the None dataset.
|
| 22 |
-
It achieves the following results on the evaluation set:
|
| 23 |
-
- Loss: 1.3126
|
| 24 |
-
- Accuracy: 0.5
|
| 25 |
-
- Precision: 0.25
|
| 26 |
-
- Recall: 0.5
|
| 27 |
-
- F1: 0.3333
|
| 28 |
-
|
| 29 |
-
## Model description
|
| 30 |
|
| 31 |
-
|
| 32 |
|
| 33 |
-
##
|
| 34 |
|
| 35 |
-
|
|
|
|
|
|
|
|
|
|
|
|
|
| 36 |
|
| 37 |
-
##
|
| 38 |
|
| 39 |
-
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 40 |
|
| 41 |
-
##
|
| 42 |
|
| 43 |
-
|
|
|
|
|
|
|
|
|
|
| 44 |
|
| 45 |
-
|
| 46 |
-
- learning_rate: 5e-05
|
| 47 |
-
- train_batch_size: 4
|
| 48 |
-
- eval_batch_size: 4
|
| 49 |
-
- seed: 42
|
| 50 |
-
- optimizer: Use adamw_torch_fused with betas=(0.9,0.999) and epsilon=1e-08 and optimizer_args=No additional optimizer arguments
|
| 51 |
-
- lr_scheduler_type: linear
|
| 52 |
-
- lr_scheduler_warmup_steps: 100
|
| 53 |
-
- num_epochs: 2
|
| 54 |
|
| 55 |
-
|
| 56 |
|
| 57 |
-
|
| 58 |
-
|
| 59 |
-
| No log | 1.0 | 2 | 1.3126 | 0.5 | 0.25 | 0.5 | 0.3333 |
|
| 60 |
-
| No log | 2.0 | 4 | 1.3204 | 0.5 | 0.25 | 0.5 | 0.3333 |
|
| 61 |
|
|
|
|
|
|
|
|
|
|
| 62 |
|
| 63 |
-
##
|
| 64 |
|
| 65 |
-
|
| 66 |
-
- Pytorch 2.10.0+cu128
|
| 67 |
-
- Datasets 4.5.0
|
| 68 |
-
- Tokenizers 0.22.2
|
|
|
|
| 1 |
---
|
| 2 |
+
license: apache-2.0
|
|
|
|
| 3 |
tags:
|
| 4 |
+
- chemistry
|
| 5 |
+
- precite
|
| 6 |
+
- chemberta
|
| 7 |
+
datasets:
|
| 8 |
+
- blainetrain/precite-dataset-FLP-Test-v10
|
| 9 |
+
base_model: seyonec/ChemBERTa-zinc-base-v1
|
| 10 |
model-index:
|
| 11 |
+
- name: FLP-Test-v10
|
| 12 |
+
results:
|
| 13 |
+
- task:
|
| 14 |
+
type: molecular-property-prediction
|
| 15 |
+
metrics:
|
| 16 |
+
- name: Accuracy
|
| 17 |
+
type: accuracy
|
| 18 |
+
value: 0.5000
|
| 19 |
+
- name: F1
|
| 20 |
+
type: f1
|
| 21 |
+
value: 0.3333
|
| 22 |
+
- name: Precision
|
| 23 |
+
type: precision
|
| 24 |
+
value: 0.2500
|
| 25 |
+
- name: Recall
|
| 26 |
+
type: recall
|
| 27 |
+
value: 0.5000
|
| 28 |
---
|
| 29 |
|
| 30 |
+
# FLP Test v10
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 31 |
|
| 32 |
+
A chemistry prediction model fine-tuned on Precite platform.
|
| 33 |
|
| 34 |
+
## Model Details
|
| 35 |
|
| 36 |
+
- **Base Model**: [seyonec/ChemBERTa-zinc-base-v1](https://huggingface.co/seyonec/ChemBERTa-zinc-base-v1)
|
| 37 |
+
- **Fine-tuned On**: 8 training samples, 2 validation samples (80/20 split)
|
| 38 |
+
- **Task**: Molecular property prediction (4 classes)
|
| 39 |
+
- **Epochs**: 2
|
| 40 |
+
- **Training Date**: 2026-02-04
|
| 41 |
|
| 42 |
+
## Performance Metrics (20% Holdout Test Set)
|
| 43 |
|
| 44 |
+
| Metric | Value |
|
| 45 |
+
|--------|-------|
|
| 46 |
+
| **Accuracy** | 0.5000 |
|
| 47 |
+
| **F1 Score** | 0.3333 |
|
| 48 |
+
| **Precision** | 0.2500 |
|
| 49 |
+
| **Recall** | 0.5000 |
|
| 50 |
+
| Training Loss | 1.4379 |
|
| 51 |
|
| 52 |
+
## Label Classes
|
| 53 |
|
| 54 |
+
- `high`
|
| 55 |
+
- `low`
|
| 56 |
+
- `medium`
|
| 57 |
+
- `very_low`
|
| 58 |
|
| 59 |
+
## Usage
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| 60 |
|
| 61 |
+
This model can be queried through the Precite platform for FLP chemistry predictions.
|
| 62 |
|
| 63 |
+
```python
|
| 64 |
+
from transformers import AutoModelForSequenceClassification, AutoTokenizer
|
|
|
|
|
|
|
| 65 |
|
| 66 |
+
model = AutoModelForSequenceClassification.from_pretrained("blainetrain/FLP-Test-v10")
|
| 67 |
+
tokenizer = AutoTokenizer.from_pretrained("blainetrain/FLP-Test-v10")
|
| 68 |
+
```
|
| 69 |
|
| 70 |
+
## Training Data
|
| 71 |
|
| 72 |
+
See the associated dataset: [blainetrain/precite-dataset-FLP-Test-v10](https://huggingface.co/datasets/blainetrain/precite-dataset-FLP-Test-v10)
|
|
|
|
|
|
|
|
|