##############################################################################
# Copyright (c) 2013-2017, Lawrence Livermore National Security, LLC.
# Produced at the Lawrence Livermore National Laboratory.
#
# This file is part of Spack.
# Created by Todd Gamblin, tgamblin@llnl.gov, All rights reserved.
# LLNL-CODE-647188
#
# For details, see https://github.com/llnl/spack
# Please also see the NOTICE and LICENSE files for our notice and the LGPL.
#
# This program is free software; you can redistribute it and/or modify
# it under the terms of the GNU Lesser General Public License (as
# published by the Free Software Foundation) version 2.1, February 1999.
#
# This program is distributed in the hope that it will be useful, but
# WITHOUT ANY WARRANTY; without even the IMPLIED WARRANTY OF
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the terms and
# conditions of the GNU Lesser General Public License for
 more details.
#
# You should have received a copy of the GNU Lesser General Public
# Li
cense along with this program; if not, write to the Free Software
# Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307 USA
##############################################################################
from spack import *


class Ngmlr(CMakePackage):
    """Ngmlr is a long-read mapper designed to align PacBilo or Oxford
       Nanopore to a reference genome with a focus on reads that span
       structural variations."""

    homepage = "https://github.com/philres/ngmlr"
    url      = "https://github.com/philres/ngmlr/archive/v0.2.5.tar.gz"

    version('0.2.5', '1b2b1aaeb6a3accc8b9f3e5c29e77037')
