Datasets:

---

kmmuleelab

/

P2Mdb

Like 1

Error code:   DatasetGenerationCastError
Exception:    DatasetGenerationCastError
Message:      An error occurred while generating the dataset

All the data files must have the same columns, but at some point there are 5 new columns ({'identical', 'accession', 'source_label', 'release_article_label', 'cells'}) and 2 missing columns ({'lineage', 'label'}).

This happened while the csv dataset builder was generating data using

hf://datasets/kmmuleelab/P2Mdb/code/validation/annotations/annotation_mapping.csv (at revision 246c9a73534d6f6293edffa533bce46a00879cf7), ['hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/annotations/annotation_lineages.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/annotations/annotation_mapping.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/annotations/results/GSE188737.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/annotations/results/by_lineage.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/annotations/results/concordance.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/annotations/results/crosstabs.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/annotations/results/dictionary.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/annotations/results/eligibility.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/annotations/results/mapping.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/annotations/results/provenance.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/annotations/results/summary.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/bulk/bulk_expression.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/bulk/bulk_integrity.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/bulk/bulk_integrity_summary.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/bulk/bulk_method.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/bulk/bulk_reproduction.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/bulk/bulk_samples.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/downstream/bulk_correlations.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/downstream/bulk_de_sensitivity.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/downstream/cellchat_stability.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/downstream/enrichment_reproduction.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/downstream/ppi_reference_compatibility.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/downstream/single_de_sensitivity.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/downstream/state_gene_coverage.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/downstream/survival_diagnostics.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/downstream/trajectory_output_coverage.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/figure1/analysis_categories.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/figure1/cancer_counts.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/figure1/cancer_mapping.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/figure1/datasets.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/figure1/role_counts.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/figure1/search_counts.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/figure2/annotation_concordance.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/figure2/single_count_summary.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/figure2/single_datasets.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/figure2/single_marker_plot.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/figure2/single_markers.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/figure2/single_mito_summary.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/figure2/single_qc.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/figure2/single_umap.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/figure3/coverage.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/figure3/example_expression.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/figure3/example_samples.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/figure3/inputs.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/figure3/integrity_summary.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/figure3/matrix_qc.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/figure3/platforms.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/figure3/reproduction.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/figure3/reproduction_summary.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/figure3/sample_qc.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/markers/results/annotation_coverage.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/markers/results/annotation_pairs.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/markers/results/markers.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/parameters.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/qc/results/tcga_scale.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/survival/literature_expression_checks.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/survival/reproduction.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/survival/summary.csv']

Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)
Traceback:    Traceback (most recent call last):
                File "/usr/local/lib/python3.14/site-packages/datasets/builder.py", line 1848, in _prepare_split_single
                  writer.write_table(table)
                  ~~~~~~~~~~~~~~~~~~^^^^^^^
                File "/usr/local/lib/python3.14/site-packages/datasets/arrow_writer.py", line 784, in write_table
                  self._write_table(pa_table, writer_batch_size=writer_batch_size)
                  ~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.14/site-packages/datasets/arrow_writer.py", line 795, in _write_table
                  pa_table = table_cast(pa_table, self._schema)
                File "/usr/local/lib/python3.14/site-packages/datasets/table.py", line 2378, in table_cast
                  return cast_table_to_schema(table, schema)
                File "/usr/local/lib/python3.14/site-packages/datasets/table.py", line 2306, in cast_table_to_schema
                  raise CastError(
                  ...<3 lines>...
                  )
              datasets.table.CastError: Couldn't cast
              accession: string
              source_label: string
              release_article_label: string
              cells: int64
              identical: bool
              -- schema metadata --
              pandas: '{"index_columns": [{"kind": "range", "name": null, "start": 0, "' + 882
              to
              {'label': Value('string'), 'lineage': Value('string')}
              because column names don't match
              
              During handling of the above exception, another exception occurred:
              
              Traceback (most recent call last):
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 1369, in compute_config_parquet_and_info_response
                  parquet_operations, partial, estimated_dataset_info = stream_convert_to_parquet(
                                                                        ~~~~~~~~~~~~~~~~~~~~~~~~~^
                      builder, max_dataset_size_bytes=max_dataset_size_bytes
                      ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                  )
                  ^
                File "/src/services/worker/src/worker/job_runners/config/parquet_and_info.py", line 948, in stream_convert_to_parquet
                  builder._prepare_split(split_generator=splits_generators[split], file_format="parquet")
                  ~~~~~~~~~~~~~~~~~~~~~~^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                File "/usr/local/lib/python3.14/site-packages/datasets/builder.py", line 1694, in _prepare_split
                  for job_id, done, content in self._prepare_split_single(
                                               ~~~~~~~~~~~~~~~~~~~~~~~~~~^
                      gen_kwargs=gen_kwargs, job_id=job_id, **_prepare_split_args
                      ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
                  ):
                  ^
                File "/usr/local/lib/python3.14/site-packages/datasets/builder.py", line 1850, in _prepare_split_single
                  raise DatasetGenerationCastError.from_cast_error(
                  ...<4 lines>...
                  )
              datasets.exceptions.DatasetGenerationCastError: An error occurred while generating the dataset
              
              All the data files must have the same columns, but at some point there are 5 new columns ({'identical', 'accession', 'source_label', 'release_article_label', 'cells'}) and 2 missing columns ({'lineage', 'label'}).
              
              This happened while the csv dataset builder was generating data using
              
              hf://datasets/kmmuleelab/P2Mdb/code/validation/annotations/annotation_mapping.csv (at revision 246c9a73534d6f6293edffa533bce46a00879cf7), ['hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/annotations/annotation_lineages.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/annotations/annotation_mapping.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/annotations/results/GSE188737.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/annotations/results/by_lineage.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/annotations/results/concordance.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/annotations/results/crosstabs.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/annotations/results/dictionary.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/annotations/results/eligibility.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/annotations/results/mapping.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/annotations/results/provenance.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/annotations/results/summary.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/bulk/bulk_expression.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/bulk/bulk_integrity.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/bulk/bulk_integrity_summary.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/bulk/bulk_method.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/bulk/bulk_reproduction.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/bulk/bulk_samples.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/downstream/bulk_correlations.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/downstream/bulk_de_sensitivity.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/downstream/cellchat_stability.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/downstream/enrichment_reproduction.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/downstream/ppi_reference_compatibility.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/downstream/single_de_sensitivity.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/downstream/state_gene_coverage.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/downstream/survival_diagnostics.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/downstream/trajectory_output_coverage.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/figure1/analysis_categories.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/figure1/cancer_counts.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/figure1/cancer_mapping.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/figure1/datasets.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/figure1/role_counts.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/figure1/search_counts.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/figure2/annotation_concordance.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/figure2/single_count_summary.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/figure2/single_datasets.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/figure2/single_marker_plot.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/figure2/single_markers.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/figure2/single_mito_summary.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/figure2/single_qc.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/figure2/single_umap.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/figure3/coverage.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/figure3/example_expression.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/figure3/example_samples.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/figure3/inputs.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/figure3/integrity_summary.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/figure3/matrix_qc.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/figure3/platforms.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/figure3/reproduction.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/figure3/reproduction_summary.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/figures/data/figure3/sample_qc.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/markers/results/annotation_coverage.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/markers/results/annotation_pairs.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/markers/results/markers.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/parameters.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/qc/results/tcga_scale.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/survival/literature_expression_checks.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/survival/reproduction.csv', 'hf://datasets/kmmuleelab/P2Mdb@246c9a73534d6f6293edffa533bce46a00879cf7/code/validation/survival/summary.csv']
              
              Please either edit the data files to have matching columns, or separate them into different configurations (see docs at https://hf.co/docs/hub/datasets-manual-configuration#multiple-configurations)