Search is not available for this dataset
name stringlengths 18 62 | sequence stringlengths 1 600 | reactivity listlengths 1 600 | seqpos listlengths 1 600 | class stringclasses 5
values | dataset stringclasses 22
values |
|---|---|---|---|---|---|
Sun, 2021 SARS-CoV-2 in vivo | TTGGGTAGTCTTGTAGTGCGTTGTTCGTTCTATGAAGACTTTTTAGAGTATCATGACGTTCGTGTTGTTTTAGATTTCATCTAAACGAACAAACTAAAATGTCTGATAATGGACCCCAAAATCAGCGAAATGCACCCCGCATTACGTTTGGTGGACCCTCAGATTCAACTGGCAGTAACCAGAATGGAGAACGCAGTGGGGCGCGATCAAAACAACGTCGGCCCCAAGGTTTACCCAATAATACTGCGTCTTGGTTCACCGCTCTCACTCAACATGGCAAGGAAGACCTTAAATTCCCTCGAGGACAAGGCGTTCCAATT... | [
0.6950000000000001,
0.057,
0.308,
0.53,
0.002,
0.54,
0.009000000000000001,
0.003,
0,
0,
0.001,
0.047,
0.016,
0.003,
0,
0.027,
0.001,
0.006,
0.001,
0,
0.116,
0.908,
0.869,
1,
0.355,
0.062,
0,
0.005,
0,
0.003,
0.14300000000000002,
0.013000000000000001,
0... | [
28175,
28176,
28177,
28178,
28179,
28180,
28181,
28182,
28183,
28184,
28185,
28186,
28187,
28188,
28189,
28190,
28191,
28192,
28193,
28194,
28195,
28196,
28197,
28198,
28199,
28200,
28201,
28202,
28203,
28204,
28205,
28206,
28207,
28208,
28209,
2... | SARS-CoV-2_gRNA | Sun, 2021 SARS-CoV-2 in vivo |
Sun, 2021 SARS-CoV-2 in vivo | GGCGTAAAACACGTCTATCAGTTACGTGCCAGATCAGTTTCACCTAAACTGTTCATCAGACAAGAGGAAGTTCAAGAACTTTACTCTCCAATTTTTCTTATTGTTGCGGCAATAGTGTTTATAACACTTTGCTTCACACTCAAAAGAAAGACAGAATGATTGAACTTTCATTAATTGACTTCTATTTGTGCTTTTTAGCCTTTCTGCTATTCCTTGTTTTAATTATGCTTATTATCTTTTGGTTCTCACTTGAACTGCAAGATCATAATGAAACTTGTCACGCCTAAACGAACATGAAATTTCTTGTTTTCTTAGGAATC... | [
0.003,
0,
0,
0.001,
0.006,
0.336,
0.866,
1,
0.4,
0.66,
0.008,
0.004,
0.001,
0,
0,
0.396,
0.459,
0.008,
0.012,
0,
0,
0.271,
0.9450000000000001,
0.166,
0.598,
0,
0,
0,
0,
0.139,
0.075,
0.062,
0.109,
0.001,
0.038,
0.021,
0,
0.042,
0.147,
0.0... | [
27600,
27601,
27602,
27603,
27604,
27605,
27606,
27607,
27608,
27609,
27610,
27611,
27612,
27613,
27614,
27615,
27616,
27617,
27618,
27619,
27620,
27621,
27622,
27623,
27624,
27625,
27626,
27627,
27628,
27629,
27630,
27631,
27632,
27633,
27634,
2... | SARS-CoV-2_gRNA | Sun, 2021 SARS-CoV-2 in vivo |
Sun, 2021 SARS-CoV-2 in vivo | CACTGTTGCTACATCACGAACGCTTTCTTATTACAAATTGGGAGCTTCGCAGCGTGTAGCAGGTGACTCAGGTTTTGCTGCATACAGTCGCTACAGGATTGGCAACTATAAATTAAACACAGACCATTCCAGTAGCAGTGACAATATTGCTTTGCTTGTACAGTAAGTGACAACAGATGTTTCATCTCGTTGACTTTCAGGTTACTATAGCAGAGATATTACTAATTATTATGAGGACTTTTAAAGTTTCCATTTGGAATCTTGATTACATCATAAACCTCATAATTAAAAATTTATCTAAGTCACTAACTGAGAATAAA... | [
0.137,
0,
0,
0.111,
0.751,
0.321,
0.101,
0.001,
0,
0.123,
0.005,
0.303,
0.08700000000000001,
0.023,
0.532,
0.003,
0,
0,
0.003,
0,
0,
0,
0,
0.004,
0.034,
0.001,
0.006,
0.29,
0.679,
0.38,
0.422,
1,
1,
1,
0.66,
0.717,
0.483,
0.849,
0.193,
0.... | [
27025,
27026,
27027,
27028,
27029,
27030,
27031,
27032,
27033,
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27035,
27036,
27037,
27038,
27039,
27040,
27041,
27042,
27043,
27044,
27045,
27046,
27047,
27048,
27049,
27050,
27051,
27052,
27053,
27054,
27055,
27056,
27057,
27058,
27059,
2... | SARS-CoV-2_gRNA | Sun, 2021 SARS-CoV-2 in vivo |
Sun, 2021 SARS-CoV-2 in vivo | AGTGTAACTTCTTCAATTGTCATTACTTCAGGTGATGGCACAACAAGTCCTATTTCTGAACATGACTACCAGATTGGTGGTTATACTGAAAAATGGGAATCTGGAGTAAAAGACTGTGTTGTATTACACAGTTACTTCACTTCAGACTATTACCAGCTGTACTCAACTCAATTGAGTACAGACACTGGTGTTGAACATGTTACCTTCTTCATCTACAATAAAATTGTTGATGAGCCTGAAGAACATGTCCAAATTCACACAATCGACGGTTCATCCGGAGTTGTTAATCCAGTAATGGAACCAATTTATGATGAACCGAC... | [
0,
0,
0,
0.007,
0,
0.001,
0.053,
0.418,
0.396,
0.186,
0.254,
0.405,
0.281,
0.524,
0.515,
0.426,
0.264,
0.067,
0.041,
0,
0.111,
0.004,
0.016,
0.068,
0.001,
0.049,
0.385,
0.247,
0.578,
0.181,
0.221,
0,
0,
0.02,
0,
0,
0,
0,
0,
0.148,
0.692... | [
25875,
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25890,
25891,
25892,
25893,
25894,
25895,
25896,
25897,
25898,
25899,
25900,
25901,
25902,
25903,
25904,
25905,
25906,
25907,
25908,
25909,
2... | SARS-CoV-2_gRNA | Sun, 2021 SARS-CoV-2 in vivo |
Sun, 2021 SARS-CoV-2 in vivo | AGTTCCTGATCTTCTGGTCTAAACGAACTAAATATTATATTAGTTTTTCTGTTTGGAACTTTAATTTTAGCCATGGCAGATTCCAACGGTACTATTACCGTTGAAGAGCTTAAAAAGCTCCTTGAACAATGGAACCTAGTAATAGGTTTCCTATTCCTTACATGGATTTGTCTTCTACAATTTGCCTATGCCAACAGGAATAGGTTTTTGTATATAATTAAGTTAATTTTCCTCTGGCTGTTATGGCCAGTAACTTTAGCTTGTTTTGTGCTTGCTGCTGTTTACAGAATAAATTGGATCACCGGTGGAATTGCTATCGC... | [
0,
0.001,
0.068,
0.007,
0,
0.528,
0.197,
0.057,
0.019,
0,
0.458,
0.016,
0,
0.114,
0.199,
0.061,
0,
0,
0.067,
0.216,
0.262,
0.273,
0.054,
0.177,
0.289,
0.01,
0.002,
0,
0.515,
1,
0.436,
0.151,
0.6900000000000001,
0.6880000000000001,
0.453,
0.9,
0... | [
26450,
26451,
26452,
26453,
26454,
26455,
26456,
26457,
26458,
26459,
26460,
26461,
26462,
26463,
26464,
26465,
26466,
26467,
26468,
26469,
26470,
26471,
26472,
26473,
26474,
26475,
26476,
26477,
26478,
26479,
26480,
26481,
26482,
26483,
26484,
2... | SARS-CoV-2_gRNA | Sun, 2021 SARS-CoV-2 in vivo |
Sun, 2021 SARS-CoV-2 in vivo | CAGCACCTCATGGTGTAGTCTTCTTGCATGTGACTTATGTCCCTGCACAAGAAAAGAACTTCACAACTGCTCCTGCCATTTGTCATGATGGAAAAGCACACTTTCCTCGTGAAGGTGTCTTTGTTTCAAATGGCACACACTGGTTTGTAACACAAAGGAATTTTTATGAACCACAAATCATTACTACAGACAACACATTTGTGTCTGGTAACTGTGATGTTGTAATAGGAATTGTCAACAACACAGTTTATGATCCTTTGCAACCTGAATTAGACTCATTCAAGGAGGAGTTAGATAAATATTTTAAGAATCATACATCA... | [
0.053,
0.073,
0,
0,
0.044,
0.001,
0.55,
0.399,
0.986,
0.808,
0.09,
0.399,
0,
0,
0,
0.005,
0.001,
0.022,
0.01,
0.011,
0.058,
0,
0.061,
0.079,
0.131,
0,
0.064,
0.013000000000000001,
0.043000000000000003,
0.002,
0.247,
0.008,
0,
0.003,
0.361,
1,
0... | [
24725,
24726,
24727,
24728,
24729,
24730,
24731,
24732,
24733,
24734,
24735,
24736,
24737,
24738,
24739,
24740,
24741,
24742,
24743,
24744,
24745,
24746,
24747,
24748,
24749,
24750,
24751,
24752,
24753,
24754,
24755,
24756,
24757,
24758,
24759,
2... | SARS-CoV-2_gRNA | Sun, 2021 SARS-CoV-2 in vivo |
Sun, 2021 SARS-CoV-2 in vivo | TTTGCTCACAGATGAAATGATTGCTCAATACACTTCTGCACTGTTAGCGGGTACAATCACTTCTGGTTGGACCTTTGGTGCAGGTGCTGCATTACAAATACCATTTGCTATGCAAATGGCTTATAGGTTTAATGGTATTGGAGTTACACAGAATGTTCTCTATGAGAACCAAAAATTGATTGCCAACCAATTTAATAGTGCTATTGGCAAAATTCAAGACTCACTTTCTTCCACAGCAAGTGCACTTGGAAAACTTCAAGATGTGGTCAACCAAAATGCACAAGCTTTAAACACGCTTGTTAAACAACTTAGCTCCAATT... | [
0.096,
0.011,
0.02,
0,
0.012,
0,
0.629,
0.014,
0.149,
0,
0.012,
0.003,
0.011,
0,
0.191,
0.526,
0.219,
0.36,
0.639,
0.67,
0.203,
0.309,
0.151,
0,
0.111,
0.79,
0.481,
0.264,
0.806,
0.496,
1,
0.376,
0.052000000000000005,
0.454,
0.169,
0.03,
0.032,... | [
24150,
24151,
24152,
24153,
24154,
24155,
24156,
24157,
24158,
24159,
24160,
24161,
24162,
24163,
24164,
24165,
24166,
24167,
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24170,
24171,
24172,
24173,
24174,
24175,
24176,
24177,
24178,
24179,
24180,
24181,
24182,
24183,
24184,
2... | SARS-CoV-2_gRNA | Sun, 2021 SARS-CoV-2 in vivo |
Sun, 2021 SARS-CoV-2 in vivo | GCTAGTTATCAGACTCAGACTAATTCTCCTCGGCGGGCACGTAGTGTAGCTAGTCAATCCATCATTGCCTACACTATGTCACTTGGTGCAGAAAATTCAGTTGCTTACTCTAATAACTCTATTGCCATACCCACAAATTTTACTATTAGTGTTACCACAGAAATTCTACCAGTGTCTATGACCAAGACATCAGTAGATTGTACAATGTACATTTGTGGTGATTCAACTGAATGCAGCAATCTTTTGTTGCAATATGGCAGTTTTTGTACACAATTAAACCGTGCTTTAACTGGAATAGCTGTTGAACAAGACAAAAACAC... | [
0.05,
0,
0.137,
0.602,
0.14200000000000002,
0.139,
0.386,
0.28200000000000003,
0.097,
0.149,
0.068,
0.10400000000000001,
0.051000000000000004,
0.262,
0.056,
0.20500000000000002,
0.374,
0.225,
0.138,
0.252,
0.503,
0.856,
0.28200000000000003,
0.372,
0.138,
0.232,
0.... | [
23575,
23576,
23577,
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23579,
23580,
23581,
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23585,
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23589,
23590,
23591,
23592,
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23595,
23596,
23597,
23598,
23599,
23600,
23601,
23602,
23603,
23604,
23605,
23606,
23607,
23608,
23609,
2... | SARS-CoV-2_gRNA | Sun, 2021 SARS-CoV-2 in vivo |
Sun, 2021 SARS-CoV-2 in vivo | GTAATGGTGTTGAAGGTTTTAATTGTTACTTTCCTTTACAATCATATGGTTTCCAACCCACTAATGGTGTTGGTTACCAACCATACAGAGTAGTAGTACTTTCTTTTGAACTTCTACATGCACCAGCAACTGTTTGTGGACCTAAAAAGTCTACTAATTTGGTTAAAAACAAATGTGTCAATTTCAACTTCAATGGTTTAACAGGCACAGGTGTTCTTACTGAGTCTAACAAAAAGTTTCTGCCTTTCCAACAATTTGGCAGAGACATTGCTGACACTACTGATGCTGTCCGTGATCCACAGACACTTGAGATTCTTGAC... | [
1,
0.684,
0.994,
0.202,
0.165,
0.004,
0.001,
0,
0,
0.262,
0.395,
0.552,
0.317,
0.04,
0.054,
0,
0.004,
0.135,
0.45,
0.294,
0.6900000000000001,
0.241,
0.14200000000000002,
0.528,
0.28,
0.41300000000000003,
0.41100000000000003,
0.23700000000000002,
0.241,
0.548... | [
23000,
23001,
23002,
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23004,
23005,
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23009,
23010,
23011,
23012,
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23019,
23020,
23021,
23022,
23023,
23024,
23025,
23026,
23027,
23028,
23029,
23030,
23031,
23032,
23033,
23034,
2... | SARS-CoV-2_gRNA | Sun, 2021 SARS-CoV-2 in vivo |
Sun, 2021 SARS-CoV-2 in vivo | TGTAGACTGTGCACTTGACCCTCTCTCAGAAACAAAGTGTACGTTGAAATCCTTCACTGTAGAAAAAGGAATCTATCAAACTTCTAACTTTAGAGTCCAACCAACAGAATCTATTGTTAGATTTCCTAATATTACAAACTTGTGCCCTTTTGGTGAAGTTTTTAACGCCACCAGATTTGCATCTGTTTATGCTTGGAACAGGAAGAGAATCAGCAACTGTGTTGCTGATTATTCTGTCCTATATAATTCCGCATCATTTTCCACTTTTAAGTGTTATGGAGTGTCTCCTACTAAATTAAATGATCTCTGCTTTACTAATG... | [
0.229,
0.222,
0.418,
0.373,
0.7000000000000001,
0.322,
0.186,
0.9380000000000001,
0.007,
0.034,
0,
0,
0,
0,
0.006,
0.06,
0.20800000000000002,
0.001,
0.042,
0,
0.183,
0.016,
0.26,
0.075,
0.627,
0.338,
0.78,
0.7000000000000001,
0.919,
0.888,
0.56900000000000... | [
22425,
22426,
22427,
22428,
22429,
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22432,
22433,
22434,
22435,
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22449,
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22452,
22453,
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22455,
22456,
22457,
22458,
22459,
2... | SARS-CoV-2_gRNA | Sun, 2021 SARS-CoV-2 in vivo |
Sun, 2021 SARS-CoV-2 in vivo | AAGTCTAACATAATAAGAGGCTGGATTTTTGGTACTACTTTAGATTCGAAGACCCAGTCCCTACTTATTGTTAATAACGCTACTAATGTTGTTATTAAAGTCTGTGAATTTCAATTTTGTAATGATCCATTTTTGGGTGTTTATTACCACAAAAACAACAAAAGTTGGATGGAAAGTGAGTTCAGAGTTTATTCTAGTGCGAATAATTGCACTTTTGAATATGTCTCTCAGCCTTTTCTTATGGACCTTGAAGGAAAACAGGGTAATTTCAAAAATCTTAGGGAATTTGTGTTTAAGAATATTGATGGTTATTTTAAAAT... | [
0.007,
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0,
0.018000000000000002,
0.587,
0.516,
0.47300000000000003,
0.227,
0.646,
0.34800000000000003,
0.22,
0.19,
0.853,
0.123,
0.257,
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0.009000000000000001,
0.001,
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0,
0,
0,
0,
0,
0,
0.014,
0.032,
0.001,
0.003,
0.079,
0.339,
0.27,
... | [
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21875,
21876,
21877,
21878,
21879,
21880,
21881,
21882,
21883,
21884,
2... | SARS-CoV-2_gRNA | Sun, 2021 SARS-CoV-2 in vivo |
Sun, 2021 SARS-CoV-2 in vivo | TGTTGTTCTTGTGGATCCTGCTGCAAATTTGATGAAGACGACTCTGAGCCAGTGCTCAAAGGAGTCAAATTACATTACACATAAACGAACTTATGGATTTGTTTATGAGAATCTTCACAATTGGAACTGTAACTTTGAAGCAAGGTGAAATCAAGGATGCTACTCCTTCAGATTTTGTTCGCGCTACTGCAACGATACCGATACAAGCCTCACTCCCTTTCGGATGGCTTATTGTTGGCGTTGCACTTCTTGCTGTTTTTCAGAGCGCTTCCAAAATCATAACCCTCAAAAAGAGATGGCAACTAGCACTCTCCAAGGGT... | [
0.6910000000000001,
0.669,
0.339,
0.931,
0.021,
0.029,
0.005,
0.018000000000000002,
0.007,
0,
0,
0.012,
0.005,
0.01,
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0.018000000000000002,
0.022,
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0,
0.013000000000000001,
0.058,
0,
0.493,
0.28,
0.327,
0.39,
0.251,
0.521,
0.... | [
25300,
25301,
25302,
25303,
25304,
25305,
25306,
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25308,
25309,
25310,
25311,
25312,
25313,
25314,
25315,
25316,
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25319,
25320,
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25322,
25323,
25324,
25325,
25326,
25327,
25328,
25329,
25330,
25331,
25332,
25333,
25334,
2... | SARS-CoV-2_gRNA | Sun, 2021 SARS-CoV-2 in vivo |
Sun, 2021 SARS-CoV-2 in vivo | TACAAAATGCAAAGAATGCTATTAGAAAAGTGTGACCTTCAAAATTATGGTGATAGTGCAACATTACCTAAAGGCATAATGATGAATGTCGCAAAATATACTCAACTGTGTCAATATTTAAACACATTAACATTAGCTGTACCCTATAATATGAGAGTTATACATTTTGGTGCTGGTTCTGATAAAGGAGTTGCACCAGGTACAGCTGTTTTAAGACAGTGGTTGCCTACGGGTACGCTGCTTGTCGATTCAGATCTTAATGACTTTGTCTCTGATGCAGATTCAACTTTGATTGGTGATTGTGCAACTGTACATACAGC... | [
0.203,
0.306,
0.28,
0.219,
0.332,
0.513,
0.154,
0.276,
0.025,
0.002,
0.037,
0.364,
0.833,
0.734,
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0.494,
0.221,
0,
0,
0.984,
0.431,
0.307,
0.621,
1,
0.132,
0.748,
0.393,
0.93,
0.35000000000000003,
0.299,
0.004,
0,
0.001,
0.002,
0,
0,
0,
0.0... | [
20700,
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20704,
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20710,
20711,
20712,
20713,
20714,
20715,
20716,
20717,
20718,
20719,
20720,
20721,
20722,
20723,
20724,
20725,
20726,
20727,
20728,
20729,
20730,
20731,
20732,
20733,
20734,
2... | SARS-CoV-2_gRNA | Sun, 2021 SARS-CoV-2 in vivo |
Watters,2018 CMV SHAPE-seq | GUAAUCUUACCACUGUGUGUGUGCGUGUGUGUGUGUCGAGUCGUGUUGUCCGCACAUUUGAGUCGUGUUGUCCGCACAUUUUAUUUUUAUCUUUGUACAGUGUGUUAGAUUUCCCGAGGCAUGGCUUUCCAAGGUACCAGUAGGACUUUAACUCAACAGUCCUCAGCGGCUACGUCUGACGAUCUUCAAAAGAUAUUAUUUAGCCCUGAAGCCAUUAAGAAAAUGGCUACUGAGUGUGACCUAGGCCGGCAUCAUUGGAUGCGCGCUGAUAAUGCUAUUUCAGUCCGGCCCCUCGUUCCCGAAGUAACCCACGGUCGUAU... | [
0.021793466,
0.003996591,
0.005207485,
0.053310016,
0.0016591910000000002,
0.003367133,
0.009617021,
0.049328979,
0.008736665000000001,
0.0022679220000000003,
0.01587123,
0.00048074,
0.008144114000000001,
0.00651728,
0.00515901,
0.007457412,
0.0089208,
0.007631064000000001,
0.014... | [
0,
1,
2,
3,
4,
5,
6,
7,
8,
9,
10,
11,
12,
13,
14,
15,
16,
17,
18,
19,
20,
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25,
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40,
41,
42,
43,
44,
45,
46,
47,
48,
49,
50,
51,
52,
53,
54... | viral_gRNA | Watters,2018 |
Watters,2018 CMV SHAPE-seq | GAAUCGCAAGCGGUGUUUUGCUGUCGUUAUCGAAAGACAUGGUUACAUUGGGUAUACCGGUACCACAGCUAGCGUGUGUAGUAAUUGGCAAGCAAGGUUUUCUUCUAAGAAUAACAACUACACUCAUAUCGCAGCUGGGAAGACUCUAGUACUGCCUUUCAACAGAUUAGCUGAGCAAACAAAACCGUCAGCUGUUGCUCGCCUGUUGAAGUCGCAAUUGAACAACAUUGAAUCUUCGCAAUAUCUGUUAACGAAUGCGAAGAUUAAUCAGAAUGCGCGCAGUGAGUCCGAGGAAUUAAAUGUUGAGAGCCCUCCCGCCG... | [
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6... | viral_gRNA | Watters,2018 |
Watters,2018 CMV SHAPE-seq | UACUUUCUCAUGGAUGCUUCUCCGCGAGAUUGCGUUAUUGUCUACUGACUAUAUAGAGAGUGUAUGUGCUGUGUUUUCUCUUUUGUGUCGUAGAAUUGAGUUGAGUCAUGGACAAAUCUGAAUCAACCAGUGCUGGUCGCAACCGUCGACGUCGUCCGCGUCGUGGUUCCCGCUCCGCCCCCUCCUCCGCGGAUGCCAACUUUAGAGUCUUGUCGCAGCAGCUUUCGCGACUUAAUAAGACGUUGUCAGCUGGUCGUCCAACUAUUAACCACCCAACCUUUGUAGGGAGUGAGCGUUGUAAACCUGGAUACACGUUCACA... | [
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1189... | viral_gRNA | Watters,2018 |
Watters,2018 CMV SHAPE-seq | GCAUCUGGAGUCCAAGCUAACAACAAAUUGUUGUAUGAUCUUUCGGCGAUGCGCGCUGAUAUAGGCGACAUGAGAAAGUACGCCGUCCUCGUGUACUCAAAAGACGAUGCACUCGAGACGGACGAGCUAGUACUUCAUGUUGACGUCGAGCACCAACGUAUUCCCACAUCUGGGGUGCUCCCAGUAUAAUUCUGUGUUUUCCAGAACCCUCCCUCCGAUUCCUGUGGCGGGAGCUGAGUUGGCAGGUUUUCUAUAAACUGUCUGAAGUCACUAAACGUUUUACGGUGAACGGGUUGUCCAUCCAGCUUACGGCUAAAAUG... | [
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1764... | viral_gRNA | Watters,2018 |
Watts,2009 HIV-1 SHAPE(NMIA) SSIII CE | GUUUGGGGAAGAGACAACAACUCCCUCUCAGAAGCAGGAGCCGAUAGACAAGGAACUGUAUCCUUUAGCUUCCCUCAGAUCACUCUUUGGCAGCGACCCCUCGUCACAAUAAAGAUAGGGGGGCAAUUAAAGGAAGCUCUAUUAGAUACAGGAGCAGAUGAUACAGUAUUAGAAGAAAUGAAUUUGCCAGGAAGAUGGAAACCAAAAAUGAUAGGGGGAAUUGGAGGUUUUAUCAAAGUAAGACAGUAUGAUCAGAUACUCAUAGAAAUCUGCGGACAUAAAGCUAUAGGUACAGUAUUAGUAGGACCUACACCUGUCAA... | [
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1764... | viral_gRNA | Watts,2009 |
Watts,2009 HIV-1 SHAPE(NMIA) SSIII CE | GUCUCUCUGGUUAGACCAGAUCUGAGCCUGGGAGCUCUCUGGCUAACUAGGGAACCCACUGCUUAAGCCUCAAUAAAGCUUGCCUUGAGUGCUCAAAGUAGUGUGUGCCCGUCUGUUGUGUGACUCUGGUAACUAGAGAUCCCUCAGACCCUUUUAGUCAGUGUGGAAAAUCUCUAGCAGUGGCGCCCGAACAGGGACUUGAAAGCGAAAGUAAAGCCAGAGGAGAUCUCUCGACGCAGGACUCGGCUUGCUGAAGCGCGCACGGCAAGAGGCGAGGGGCGGCGACUGGUGAGUACGCCAAAAAUUUUGACUAGCGGAGG... | [
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48,
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50,
51,
52,
53,
54... | viral_gRNA | Watts,2009 |
Watts,2009 HIV-1 SHAPE(NMIA) SSIII CE | GGGCUAAUUCACUCCCAAAGAAGACAAGAUAUCCUUGAUCUGUGGAUCUACCACACACAAGGCUACUUCCCUGAUUGGCAGAACUACACACCAGGGCCAGGGGUCAGAUAUCCACUGACCUUUGGAUGGUGCUACAAGCUAGUACCAGUUGAGCCAGAUAAGGUAGAAGAGGCCAAUAAAGGAGAGAACACCAGCUUGUUACACCCUGUGAGCCUGCAUGGAAUGGAUGACCCUGAGAGAGAAGUGUUAGAGUGGAGGUUUGACAGCCGCCUAGCAUUUCAUCACGUGGCCCGAGAGCUGCAUCCGGAGUACUUCAAGAA... | [
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8664... | viral_gRNA | Watts,2009 |
Watts,2009 HIV-1 SHAPE(NMIA) SSIII CE | CCUCUUCAGCUACCACCGCUUGAGAGACUUACUCUUGAUUGUAACGAGGAUUGUGGAACUUCUGGGACGCAGGGGGUGGGAAGCCCUCAAAUAUUGGUGGAAUCUCCUACAGUAUUGGAGUCAGGAACUAAAGAAUAGUGCUGUUAACUUGCUCAAUGCCACAGCCAUAGCAGUAGCUGAGGGGACAGAUAGGGUUAUAGAAGUAUUACAAGCAGCUUAUAGAGCUAUUCGCCACAUACCUAGAAGAAUAAGACAGGGCUUGGAAAGGAUUUUGCUAUAAGAUGGGUGGCAAGUGGUCAAAAAGUAGUGUGAUUGGAUGG... | [
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8083,
8084,
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8088,
8089... | viral_gRNA | Watts,2009 |
Watts,2009 HIV-1 SHAPE(NMIA) SSIII CE | AUCAAACAGCUCCAGGCAAGAAUCCUGGCUGUGGAAAGAUACCUAAAGGAUCAACAGCUCCUGGGGAUUUGGGGUUGCUCUGGAAAACUCAUUUGCACCACUGCUGUGCCUUGGAAUGCUAGUUGGAGUAAUAAAUCUCUGGAACAGAUUUGGAAUAACAUGACCUGGAUGGAGUGGGACAGAGAAAUUAACAAUUACACAAGCUUAAUACACUCCUUAAUUGAAGAAUCGCAAAACCAGCAAGAAAAGAAUGAACAAGAAUUAUUGGAAUUAGAUAAAUGGGCAAGUUUGUGGAAUUGGUUUAACAUAACAAAUUGGCU... | [
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0.0... | [
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7508,
7509,
7510,
7511,
7512,
7513,
7514... | viral_gRNA | Watts,2009 |
Watts,2009 HIV-1 SHAPE(NMIA) SSIII CE | AAUUUUUCUACUGUAAUUCAACACAACUGUUUAAUAGUACUUGGUUUAAUAGUACUUGGAGUACUGAAGGGUCAAAUAACACUGAAGGAAGUGACACAAUCACACUCCCAUGCAGAAUAAAACAAUUUAUAAACAUGUGGCAGGAAGUAGGAAAAGCAAUGUAUGCCCCUCCCAUCAGUGGACAAAUUAGAUGUUCAUCAAAUAUUACUGGGCUGCUAUUAACAAGAGAUGGUGGUAAUAACAACAAUGGGUCCGAGAUCUUCAGACCUGGAGGAGGCGAUAUGAGGGACAAUUGGAGAAGUGAAUUAUAUAAAUAUAAA... | [
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1.42,
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0.... | [
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6930,
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6937,
6938,
6939... | viral_gRNA | Watts,2009 |
Watts,2009 HIV-1 SHAPE(NMIA) SSIII CE | AUAGUAAGAAUGUAUAGCCCUACCAGCAUUCUGGACAUAAGACAAGGACCAAAGGAACCCUUUAGAGACUAUGUAGACCGAUUCUAUAAAACUCUAAGAGCCGAGCAAGCUUCACAAGAGGUAAAAAAUUGGAUGACAGAAACCUUGUUGGUCCAAAAUGCGAACCCAGAUUGUAAGACUAUUUUAAAAGCAUUGGGACCAGGAGCGACACUAGAAGAAAUGAUGACAGCAUGUCAGGGAGUGGGGGGACCCGGCCAUAAAGCAAGAGUUUUGGCUGAAGCAAUGAGCCAAGUAACAAAUCCAGCUACCAUAAUGAUACA... | [
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0.12... | [
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1183,
1184,
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1186,
1187,
1188,
1189... | viral_gRNA | Watts,2009 |
Watts,2009 HIV-1 SHAPE(NMIA) SSIII CE | CAGCUAUAGGUUGAUAAGUUGUAACACCUCAGUCAUUACACAGGCCUGUCCAAAGGUAUCCUUUGAGCCAAUUCCCAUACAUUAUUGUGCCCCGGCUGGUUUUGCGAUUCUAAAAUGUAAUAAUAAGACGUUCAAUGGAACAGGACCAUGUACAAAUGUCAGCACAGUACAAUGUACACAUGGAAUCAGGCCAGUAGUAUCAACUCAACUGCUGUUAAAUGGCAGUCUAGCAGAAGAAGAUGUAGUAAUUAGAUCUGCCAAUUUCACAGACAAUGCUAAAACCAUAAUAGUACAGCUGAACACAUCUGUAGAAAUUAAUU... | [
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0.13,
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0.17,
0.6000000000000001,
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0.45,... | [
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6360,
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6363,
6364... | viral_gRNA | Watts,2009 |
Watts,2009 HIV-1 SHAPE(NMIA) SSIII CE | GAACUUAAGAGUGAAGCUGUUAGACAUUUUCCUAGGAUAUGGCUCCAUAACUUAGGACAACAUAUCUAUGAAACUUACGGGGAUACUUGGGCAGGAGUGGAAGCCAUAAUAAGAAUUCUGCAACAACUGCUGUUUAUCCAUUUCAGAAUUGGGUGUCGACAUAGCAGAAUAGGCGUUACUCGACAGAGGAGAGCAAGAAAUGGAGCCAGUAGAUCCUAGACUAGAGCCCUGGAAGCAUCCAGGAAGUCAGCCUAAAACUGCUUGUACCAAUUGCUAUUGUAAAAAGUGUUGCUUUCAUUGCCAAGUUUGUUUCAUGACAA... | [
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0.08,
0.55,
0.06,
0.17,
0.26,
0.6000000000000001,
0.15,
0.07,
0.14,
0.3000000000000000... | [
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5209,
5210,
5211,
5212,
5213,
5214... | viral_gRNA | Watts,2009 |
Watts,2009 HIV-1 SHAPE(NMIA) SSIII CE | CAGGUGAUGAUUGUGUGGCAAGUAGACAGGAUGAGGAUUAACACAUGGAAAAGAUUAGUAAAACACCAUAUGUAUAUUUCAAGGAAAGCUAAGGACUGGUUUUAUAGACAUCACUAUGAAAGUACUAAUCCAAAAAUAAGUUCAGAAGUACACAUCCCACUAGGGGAUGCUAAAUUAGUAAUAACAACAUAUUGGGGUCUGCAUACAGGAGAAAGAGACUGGCAUUUGGGUCAGGGAGUCUCCAUAGAAUGGAGGAAAAAGAGAUAUAGCACACAAGUAGACCCUGACCUAGCAGACCAACUAAUUCAUCUGCACUAUUU... | [
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0.99,
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0.77,
0.29,
0.81,
0.63,
0.6900000000000001,
0.8300000000000001,
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4630,
4631,
4632,
4633,
4634,
4635,
4636,
4637,
4638,
4639... | viral_gRNA | Watts,2009 |
Watts,2009 HIV-1 SHAPE(NMIA) SSIII CE | AGAAGCAGAAGUAAUUCCAGCAGAGACAGGGCAAGAAACAGCAUACUUCCUCUUAAAAUUAGCAGGAAGAUGGCCAGUAAAAACAGUACAUACAGACAAUGGCAGCAAUUUCACCAGUACUACAGUUAAGGCCGCCUGUUGGUGGGCGGGGAUCAAGCAGGAAUUUGGCAUUCCCUACAAUCCCCAAAGUCAAGGAGUAAUAGAAUCUAUGAAUAAAGAAUUAAAGAAAAUUAUAGGACAGGUAAGAGAUCAGGCUGAACAUCUUAAGACAGCAGUACAAAUGGCAGUAUUCAUCCACAAUUUUAAAAGAAAAGGGGGGA... | [
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0.63,
0.43,
0.8200000000000001,
0.39,
0.13,
0.06,
0.31,
0.12,
0.59,
0.2,
0.11,
0.52,
0.5700000000000001,
0.86,
0.58,
0.49,
0.28,
0.85,
0.32,
0.14,
0.1,
0,
0.6900000000000001,
0.68... | [
4025,
4026,
4027,
4028,
4029,
4030,
4031,
4032,
4033,
4034,
4035,
4036,
4037,
4038,
4039,
4040,
4041,
4042,
4043,
4044,
4045,
4046,
4047,
4048,
4049,
4050,
4051,
4052,
4053,
4054,
4055,
4056,
4057,
4058,
4059,
4060,
4061,
4062,
4063,
4064... | viral_gRNA | Watts,2009 |
Watts,2009 HIV-1 SHAPE(NMIA) SSIII CE | GGAAAAGCAGGAUAUGUAACUGACAGAGGAAGACAAAAAGUUGUCCCCCUAACGGACACAACAAAUCAGAAGACUGAGUUACAAGCAAUUCAUCUAGCUUUGCAGGAUUCGGGAUUAGAAGUAAACAUAGUGACAGACUCACAAUAUGCAUUGGGAAUCAUUCAAGCACAACCAGAUAAGAGUGAAUCAGAGUUAGUCAGUCAAAUAAUAGAGCAGUUAAUAAAAAAGGAAAAAGUCUACCUGGCAUGGGUACCAGCACACAAAGGAAUUGGAGGAAAUGAACAAGUAGAUGGGUUGGUCAGUGCUGGAAUCAGGAAAGU... | [
1.09,
0.74,
1.01,
0.74,
0.63,
0.96,
0.34,
0,
0.42,
0.41000000000000003,
0.53,
0.73,
0.23,
0.85,
0.27,
0.30000000000000004,
0.1,
0.46,
0.54,
0.01,
0.45,
1.06,
1.04,
0,
0.52,
0.4,
0.74,
0.66,
0.68,
0.5700000000000001,
0.8200000000000001,
0.68,
1.01,
0.... | [
3450,
3451,
3452,
3453,
3454,
3455,
3456,
3457,
3458,
3459,
3460,
3461,
3462,
3463,
3464,
3465,
3466,
3467,
3468,
3469,
3470,
3471,
3472,
3473,
3474,
3475,
3476,
3477,
3478,
3479,
3480,
3481,
3482,
3483,
3484,
3485,
3486,
3487,
3488,
3489... | viral_gRNA | Watts,2009 |
Watts,2009 HIV-1 SHAPE(NMIA) SSIII CE | UGGGAAAAUUGAAUUGGGCAAGUCAGAUUUAUGCAGGGAUUAAAGUAAGGCAAUUAUGUAAACUUCUUAGGGGAACCAAAGCACUAACAGAAGUAGUACCACUAACAGAAGAAGCAGAGCUAGAACUGGCAGAAAACAGGGAGAUUCUAAAAGAACCGGUACAUGGAGUGUAUUAUGACCCAUCAAAAGACUUAAUAGCAGAAAUACAGAAGCAGGGGCAAGGCCAAUGGACAUAUCAAAUUUAUCAAGAGCCAUUUAAAAAUCUGAAAACAGGAAAAUAUGCAAGAAUGAAGGGUGCCCACACUAAUGAUGUGAAACAA... | [
0.13,
0.18,
0.16,
0.08,
0.28,
0.4,
0.42,
0.47000000000000003,
0.4,
0.49,
0.91,
0.91,
0.43,
0.38,
0.30000000000000004,
0.37,
0.43,
0.25,
0,
0.32,
0.34,
0.17,
0.17,
0.15,
0.43,
0.39,
0.43,
0.21,
0.34,
0.43,
1.03,
0.27,
0.25,
0.08,
0.35000000000000003... | [
2875,
2876,
2877,
2878,
2879,
2880,
2881,
2882,
2883,
2884,
2885,
2886,
2887,
2888,
2889,
2890,
2891,
2892,
2893,
2894,
2895,
2896,
2897,
2898,
2899,
2900,
2901,
2902,
2903,
2904,
2905,
2906,
2907,
2908,
2909,
2910,
2911,
2912,
2913,
2914... | viral_gRNA | Watts,2009 |
Watts,2009 HIV-1 SHAPE(NMIA) SSIII CE | UAAAUGGAGAAAAUUAGUAGAUUUCAGAGAACUUAAUAAGAGAACUCAAGAUUUCUGGGAAGUUCAAUUAGGAAUACCACAUCCUGCAGGGUUAAAACAGAAAAAAUCAGUAACAGUACUGGAUGUGGGCGAUGCAUAUUUUUCAGUUCCCUUAGAUAAAGACUUCAGGAAGUAUACUGCAUUUACCAUACCUAGUAUAAACAAUGAGACACCAGGGAUUAGAUAUCAGUACAAUGUGCUUCCACAGGGAUGGAAAGGAUCACCAGCAAUAUUCCAGUGUAGCAUGACAAAAAUCUUAGAGCCUUUUAGAAAACAAAAUC... | [
0.56,
0.65,
1.24,
1.53,
0.36,
0.04,
0.09,
0.38,
0.09,
0.68,
0.8300000000000001,
0.5700000000000001,
0.29,
0.18,
0.58,
1.96,
0.24,
0.12,
0.29,
0.21,
0.28,
0.12,
0.14,
0.17,
0.05,
0.84,
0.32,
0.5,
0.5,
0.56,
0.5,
0.04,
0.21,
0.35000000000000003,
0.72... | [
2300,
2301,
2302,
2303,
2304,
2305,
2306,
2307,
2308,
2309,
2310,
2311,
2312,
2313,
2314,
2315,
2316,
2317,
2318,
2319,
2320,
2321,
2322,
2323,
2324,
2325,
2326,
2327,
2328,
2329,
2330,
2331,
2332,
2333,
2334,
2335,
2336,
2337,
2338,
2339... | viral_gRNA | Watts,2009 |
Watts,2009 HIV-1 SHAPE(NMIA) SSIII CE | CAGAAGACAGUGGCAAUGAGAGUGAAGGAGAAGUAUCAGCACUUGUGGAGAUGGGGGUGGAAAUGGGGCACCAUGCUCCUUGGGAUAUUGAUGAUCUGUAGUGCUACAGAAAAAUUGUGGGUCACAGUCUAUUAUGGGGUACCUGUGUGGAAGGAAGCAACCACCACUCUAUUUUGUGCAUCAGAUGCUAAAGCAUAUGAUACAGAGGUACAUAAUGUUUGGGCCACACAUGCCUGUGUACCCACAGACCCCAACCCACAAGAAGUAGUAUUGGUAAAUGUGACAGAAAAUUUUAACAUGUGGAAAAAUGACAUGGUAGA... | [
0,
0.30000000000000004,
0.22,
0.67,
0.7000000000000001,
0.56,
0.5700000000000001,
0.19,
0.68,
0.81,
0.29,
0.08,
0.1,
0.06,
0.22,
0.27,
0.09,
0.2,
0.30000000000000004,
0.2,
0.28,
0.24,
0.14,
0.81,
0.8,
0.97,
0.73,
0.98,
0.86,
0.81,
1.07,
0.87,
0.78,
0... | [
5750,
5751,
5752,
5753,
5754,
5755,
5756,
5757,
5758,
5759,
5760,
5761,
5762,
5763,
5764,
5765,
5766,
5767,
5768,
5769,
5770,
5771,
5772,
5773,
5774,
5775,
5776,
5777,
5778,
5779,
5780,
5781,
5782,
5783,
5784,
5785,
5786,
5787,
5788,
5789... | viral_gRNA | Watts,2009 |
Watts,2009 HIV-1 SHAPE(NMIA) SSIII CE | CAAUAGCAGUCCUCUAUUGUGUGCAUCAAAGGAUAGAUGUAAAAGACACCAAGGAAGCCUUAGAUAAGAUAGAGGAAGAGCAAAACAAAAGUAAGAAAAAGGCACAGCAAGCAGCAGCUGACACAGGAAACAACAGCCAGGUCAGCCAAAAUUACCCUAUAGUGCAGAACCUCCAGGGGCAAAUGGUACAUCAGGCCAUAUCACCUAGAACUUUAAAUGCAUGGGUAAAAGUAGUAGAAGAGAAGGCUUUCAGCCCAGAAGUAAUACCCAUGUUUUCAGCAUUAUCAGAAGGAGCCACCCCACAAGAUUUAAAUACCAUG... | [
0.37,
0.62,
0.36,
0.7000000000000001,
0.12,
0.01,
0.46,
0.4,
0.14,
0.09,
0,
0.11,
0.11,
0.15,
0.08,
0.15,
0.1,
0.42,
0.81,
0.08,
0.5700000000000001,
0.23,
0.27,
0.05,
0.16,
0,
0.13,
0.31,
0.42,
0.44,
0.24,
0.29,
0.48,
0.54,
1.11,
0.31,
0.300000... | [
575,
576,
577,
578,
579,
580,
581,
582,
583,
584,
585,
586,
587,
588,
589,
590,
591,
592,
593,
594,
595,
596,
597,
598,
599,
600,
601,
602,
603,
604,
605,
606,
607,
608,
609,
610,
611,
612,
613,
614,
615,
616,
617,
618,
619,
6... | viral_gRNA | Watts,2009 |
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