pmid stringlengths 10 10 | image imagewidth (px) 788 1.1k | text stringlengths 454 9.42k | conversations listlengths 2 2 |
|---|---|---|---|
10953000.0 | no BAF
BAF
80
NGF
b
a
Figure 4. 0 - DIV SCG neurons fail to respond
trophically to NGF stimulation after NGF depri-
NGF
vation and BAF treatment . 0 - DIV neurons were
initially cultured in the absence or presence of 50
ng / ml NGF and / or 100 μM BAF for 24 h , and
no
then treated with 100 ng / ml NGF and photo-
graph... | [
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"content": [
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"type": "text",
"text": "no BAF\nBAF\n80\nNGF\nb\na\nFigure 4. 0 - DIV SCG neurons fail to respond\ntrophically to NGF stimulation after NGF depri-\... | |
25916852.0 | 4988 Nucleic Acids Research , 2015 , Vol . 43 , No. 10
REFERENCES
22. Liu , K. , Bellam , N. , Lin , H.Y. , Wang , B. , Stockard , C.R. , Grizzle , W.E.
and Lin , W.C. ( 2009 ) Regulation of p53 by TopBP1 : a potential
1. Vlatkovic , N. , Boyd , M.T. and Rubbi , C.P. ( 2014 ) Nucleolar control of
mechanism for p53 inac... | [
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"content": [
{
"type": "text",
"text": "4988 Nucleic Acids Research , 2015 , Vol . 43 , No. 10\nREFERENCES\n22. Liu , K. , Bellam , N. , Lin , H.Y. , Wang , B. , S... | |
25916852.0 | Published online 27 April 2015
Nucleic Acids Research , 2015 , Vol . 43 , No. 10 4975-4989
doi : 10.1093 / nar / gkv371
High levels of TopBP1 induce ATR - dependent
shut - down of rRNA transcription and nucleolar
segregation
Miiko Sokka¹ , 2 , * , Kirsi Rilla² , Ilkka Miinalainen³ , Helmut Pospiech 4,5 and Juhani E. Sy... | [
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"content": [
{
"type": "text",
"text": "Published online 27 April 2015\nNucleic Acids Research , 2015 , Vol . 43 , No. 10 4975-4989\ndoi : 10.1093 / nar / gkv371\n... | |
25897113.0 | 4838 Nucleic Acids Research , 2015 , Vol . 43 , No. 10
A
B
80
15
chr6 : 52,020,378-52,185,033
Genome
3.16-07
)
)
150
13.10-071
(
1.28-322
)
(
)
)
RAR
-
08
%
%
( 3.16-07
1.2e
(
(
1
1.66-322
Vehicle
Percentage
Percentage
350
- 275
3.2e
R
(
RXR
40
2.36-28
)
)
1.16-18
(
5
150
)
(
20
06
20
)
-
33
)
-
)
1.7e
RAR
(
6.5e
0.130... | [
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],
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{
"content": [
{
"type": "text",
"text": "4838 Nucleic Acids Research , 2015 , Vol . 43 , No. 10\nA\nB\n80\n15\nchr6 : 52,020,378-52,185,033\nGenome\n3.16-07\n)\n)\n... | |
25897113.0 | 4836 Nucleic Acids Research , 2015 , Vol . 43 , No. 10
Assessing the correlation between RAR / RXR and other TFs
Detection of differentially expressed genes with RNA - seq
occupancy
data
We collected the peak summits from the previously de-
The reads from mRNA - seq samples were aligned using
scribed ChIP - seq data se... | [
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"role": "user"
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{
"content": [
{
"type": "text",
"text": "4836 Nucleic Acids Research , 2015 , Vol . 43 , No. 10\nAssessing the correlation between RAR / RXR and other TFs\nDetectio... | |
26673719.0 | Nucleic Acids Research , 2016 , Vol . 44 , No. 3 1387
miR168 guide strand 5 ' UCGCUUGGUGCAGGUCGGGAC 3 '
miR390 guide strand 5 ' AAGCUCAGGAGGGAUAGCGCC 3 '
|||||||||||||||
miR168 binding site ( AGO1A ) 3 ' AACGAACCACGUCGAGCCCAU 5 '
miR168 sensor
miR390 binding site ( TAS3-3 ' ) 3 ' AUCGAGUCCUCCCUAUCUGUU 5 '
TAS3 sensor
o... | [
{
"content": [
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"type": "text",
"text": "OCR this page."
}
],
"role": "user"
},
{
"content": [
{
"type": "text",
"text": "Nucleic Acids Research , 2016 , Vol . 44 , No. 3 1387\nmiR168 guide strand 5 ' UCGCUUGGUGCAGGUCGGGAC 3 '\nmiR390 guide stra... | |
25690899.0 | Nucleic Acids Research , 2015 , Vol . 43 , No. 5 2591
Control pre - B cells and other blood cells
450k array data of relapsed B - ALLS was obtained from a
clinical set of patients ( GSE49031 ) ( 7 ) .
Expression and methylation data of purified pre - B cells in
four developmental stages were retrieved from our previ-
o... | [
{
"content": [
{
"type": "text",
"text": "OCR this page."
}
],
"role": "user"
},
{
"content": [
{
"type": "text",
"text": "Nucleic Acids Research , 2015 , Vol . 43 , No. 5 2591\nControl pre - B cells and other blood cells\n450k array data of rela... | |
24185702.0 | Nucleic Acids Research , 2014 , Vol . 42 , Database issue D387
FUNCOUP
Search
MaxLink
Statistics
Help
Download
Contact
v.3.0 build 2013-07
Network
Interactions
Interactors
Save
Modify Search
▼ Query interactions
Confidence
Network
Evidence types
Species
Known
DOM
GIN
HSA
DRE
CIN
DME
CEL
SCE
ATH
Interaction partners
▼ M... | [
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"content": [
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"text": "OCR this page."
}
],
"role": "user"
},
{
"content": [
{
"type": "text",
"text": "Nucleic Acids Research , 2014 , Vol . 42 , Database issue D387\nFUNCOUP\nSearch\nMaxLink\nStatistics\nHelp\nDownload\nConta... | |
24185702.0 | D380 - D388 Nucleic Acids Research , 2014 , Vol . 42 , Database issue
Published online 31 October 2013
doi : 10.1093 / nar / gkt984
FunCoup 3.0 : database of genome - wide functional
coupling networks
Thomas Schmitt 1,2 , Christoph Ogris 1,2 and Erik L. L. Sonnhammer 1,2,3 , *
1Stockholm Bioinformatics Centre , Science... | [
{
"content": [
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"type": "text",
"text": "OCR this page."
}
],
"role": "user"
},
{
"content": [
{
"type": "text",
"text": "D380 - D388 Nucleic Acids Research , 2014 , Vol . 42 , Database issue\nPublished online 31 October 2013\ndoi : 10.1093 / na... | |
24081581.0 | 704 Nucleic Acids Research , 2014 , Vol . 42 , No. 2
action that achieves one of two goals . First , core
plays important roles in cell adhesion , migration , growth
compo-
nents of the spliceosome are recruited to ensure efficient
and differentiation ( 69 ) . FN1 produces different protein
and accurate removal of intr... | [
{
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"type": "text",
"text": "OCR this page."
}
],
"role": "user"
},
{
"content": [
{
"type": "text",
"text": "704 Nucleic Acids Research , 2014 , Vol . 42 , No. 2\naction that achieves one of two goals . First , core\nplays important... | |
23748561.0 | Nucleic Acids Research , 2013 , Vol . 41 , No. 14 6823
Simulated genes with a predefined correlation between
Comparison to other approaches
methylation and expression were added into two kinds of
We compared the quality of the gene lists produced by our
background data sets : randomly generated simulated
approach to li... | [
{
"content": [
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"type": "text",
"text": "OCR this page."
}
],
"role": "user"
},
{
"content": [
{
"type": "text",
"text": "Nucleic Acids Research , 2013 , Vol . 41 , No. 14 6823\nSimulated genes with a predefined correlation between\nComparison t... | |
26130722.0 | e134 Nucleic Acids Research , 2015 , Vol . 43 , No. 20
PAGE 6 OF 8
A
B
AAVS1 guide RNA
PAM
TGGG G C CACTAG G GACAGG AT
GGTG
HPRT GRNA
No DNA
Cas9
AAVS1 gRNA
( no selection )
TGGG GCCAC TAGGGG GGCTGGAGGATT
AAVS1 gRNA
HPRT GRNA
TGGGGCCA TAGGG : ACAGG
AT
GT G
U2OS cells ( + 6 - TG )
HPRT GRNA
C
5 ' TGGGGCCACTAGGGACAGGATTG... | [
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"role": "user"
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"content": [
{
"type": "text",
"text": "e134 Nucleic Acids Research , 2015 , Vol . 43 , No. 20\nPAGE 6 OF 8\nA\nB\nAAVS1 guide RNA\nPAM\nTGGG G C CACTAG G GACAGG A... | |
23558747.0 | 4896 Nucleic Acids Research , 2013 , Vol . 41 , No. 9
A
D
1.2
A
0.8
wt
wt
Δ
A260
SI
SE
P
SI
SE
P
00
0.4
M
MeCP2
0.0
0
5
10
15
20
25
Fraction number
H4
wt
A
14 15 16 17 18 19 20 21 22 23 24
SI
SE
B
SI
SE
C
E
wt
Δ
Cf
wt Δ
CM wt A CM WA
0.9
0.6
A
wt
도우
H1
0.3
H1
395
M
H5
345
332-7
D
270
1
0.0
259
0
5
10
15
20
25
206
Fract... | [
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],
"role": "user"
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{
"content": [
{
"type": "text",
"text": "4896 Nucleic Acids Research , 2013 , Vol . 41 , No. 9\nA\nD\n1.2\nA\n0.8\nwt\nwt\nΔ\nA260\nSI\nSE\nP\nSI\nSE\nP\n00\n0.4\nM... | |
23396449.0 | Nucleic Acids Research , 2013 , Vol . 41 , No. 6 3959
conditions , including SLE , psoriasis , rheumatoid arthritis
REFERENCES
and multiple sclerosis ( 3-8 ) . Endogenous immune
1. Kawai , T. and Akira , S . ( 2010 ) The role of pattern - recognition
complexes containing self - nucleic acids act as ligands for
receptor... | [
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"text": "OCR this page."
}
],
"role": "user"
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{
"content": [
{
"type": "text",
"text": "Nucleic Acids Research , 2013 , Vol . 41 , No. 6 3959\nconditions , including SLE , psoriasis , rheumatoid arthritis\nREFER... | |
23393188.0 | 3524 Nucleic Acids Research , 2013 , Vol . 41 , No. 6
2.5
A
B
T0901317 specific peaks
GAGUITACI
2.0-
p - value : 2.6e - 9
TAUNT
bpt
the
TCAT
my
TRANSFAC : LXR : RXR
m00647
GGA
1.5-
1.0-
Shared peaks
p - value : 4.3e - 64
0.5-
TRANSFAC : LXR : RXR
m00647
0.0-
T0901317
Shared peaks
Foam cell
specific peaks
specific peaks... | [
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],
"role": "user"
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{
"content": [
{
"type": "text",
"text": "3524 Nucleic Acids Research , 2013 , Vol . 41 , No. 6\n2.5\nA\nB\nT0901317 specific peaks\nGAGUITACI\n2.0-\np - value : 2.6... | |
23036836.0 | e23 Nucleic Acids Research , 2013 , Vol . 41 , No. 1
PAGE 8 OF 21
4500000
1200000-
□ E. coli
M. jannaschii
1000000
H. influenzae
A. fulgidus
R. solanacearum
800000
B. subtilis
D. radiodurans
Nucleotides
N. gonorrheae
600000
■ S . meliloti
■ Synechocystis
T. maritima
400000
...
i
200000
0
123456
11 12 13 14 15
7 8 9
10
... | [
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"content": [
{
"type": "text",
"text": "e23 Nucleic Acids Research , 2013 , Vol . 41 , No. 1\nPAGE 8 OF 21\n4500000\n1200000-\n□ E. coli\nM. jannaschii\n1000000\nH... | |
23036836.0 | e23 Nucleic Acids Research , 2013 , Vol . 41 , No. 1
PAGE 10 OF 21
genome . Vernikos and Parkhill have compiled a high
confidence set of genomic islands ( Supplementary
Table S2 ) large regions with functionally related
759
525
genes acquired through the process of HGT ( 47 ) . We
Native
488
subjected all methods
)
) )... | [
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"content": [
{
"type": "text",
"text": "e23 Nucleic Acids Research , 2013 , Vol . 41 , No. 1\nPAGE 10 OF 21\ngenome . Vernikos and Parkhill have compiled a high\nc... |
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