Datasets:

GenerTeam
/

variant-effect-prediction

task_categories:
  - zero-shot-classification
tags:
  - biology
  - genomics
  - long-context
configs:
  - config_name: hg38
    data_files:
      - split: test
        path: hg38.parquet
  - config_name: ClinVar_VEP_results
    data_files:
      - split: test
        path: ClinVar_VEP_results.parquet

Updates

[2025-09-09] We have added ClinVar variant effect prediction results to the repository. The evaluation dataset was sourced from SongLab. The benchmark includes comparisons of GENERator against Evo2, NT, NT-v2, HyenaDNA, GPN-MSA, CADD, phyloP, and phastCons.

Abouts

The human reference genome data is sourced from the NCBI website.

We have applied minor formatting adjustments to the dataset to facilitate streamlined data analysis.

How to use

from datasets import load_dataset

datasets = load_dataset("GenerTeam/variant-effect-prediction")