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--- |
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task_categories: |
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- zero-shot-classification |
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tags: |
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- biology |
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- genomics |
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- long-context |
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configs: |
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- config_name: hg38 |
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data_files: |
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- split: test |
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path: hg38.parquet |
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- config_name: ClinVar_VEP_results |
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data_files: |
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- split: test |
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path: ClinVar_VEP_results.parquet |
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--- |
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## Updates |
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**[2025-09-09]** We have added ClinVar variant effect prediction results to the repository. The evaluation dataset was sourced from [SongLab](https://huggingface.co/datasets/songlab/clinvar/tree/main). The benchmark includes comparisons of GENERator against Evo2, NT, NT-v2, HyenaDNA, GPN-MSA, CADD, phyloP, and phastCons. |
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## Abouts |
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The human reference genome data is sourced from the [NCBI website](https://www.ncbi.nlm.nih.gov/datasets/genome/GCF_000001405.40/). |
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We have applied minor formatting adjustments to the dataset to facilitate streamlined data analysis. |
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## How to use |
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```python |
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from datasets import load_dataset |
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datasets = load_dataset("GenerTeam/variant-effect-prediction") |
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``` |
