Search is not available for this dataset
name stringlengths 18 62 | sequence stringlengths 1 600 | reactivity listlengths 1 600 | seqpos listlengths 1 600 | class stringclasses 5
values | dataset stringclasses 22
values |
|---|---|---|---|---|---|
Huber (2019), ZSIN | AAATTTTTGGAGCAGCTTTCAAATCATTGTTTGGAGGAATGTCCTGGTTCTCACAAATTCTCATTGGAACGTTGCTGATGTGGTTGGGCCTGAACACAAAGAATGGATCTATTTCCCTTATGTGCTTGGCCTTAGGGGGAGTGTTGATCTTCTTATCCACAGCCGTCTCTGCTGATGTGGGGTGCTCGGTGGACTTCTCAAAGAAGGAAACGAGATGCGGTACAGGGGTGTTCGTCTATAACGACGTTGAAGCCTGGAGGGACAGGTACAAGTACCATCCTGACTCCCCCCGTAGATTGGCAGCAGCAGTCAAGCAAGCC... | [
0.244117,
0.505665,
0.474666,
0.703823,
1.867202,
0.121587,
0.168453,
0.432012,
0.5520459999999999,
0.119076,
0.25921,
0.014820000000000002,
0.418212,
0.775138,
0.39445,
0.10912799999999999,
0.108134,
0.173405,
0.061362999999999994,
0.651121,
0.585317,
0.146318,
1.718945,... | [
2300,
2301,
2302,
2303,
2304,
2305,
2306,
2307,
2308,
2309,
2310,
2311,
2312,
2313,
2314,
2315,
2316,
2317,
2318,
2319,
2320,
2321,
2322,
2323,
2324,
2325,
2326,
2327,
2328,
2329,
2330,
2331,
2332,
2333,
2334,
2335,
2336,
2337,
2338,
2339... | viral_gRNA | Huber, 2019 in virion |
Huber (2019), ZSIN | ATCTTGGACACATGTGTGATGCCACCATGAGCTATGAATGCCCTATGCTGGATGAGGGGGTAGAACCAGATGACGTCGATTGTTGGTGCAACACGACGTCAACTTGGGTTGTGTACGGAACCTGCCATCACAAAAAAGGTGAAGCACGGAGATCTAGAAGAGCTGTGACGCTCCCCTCCCATTCCACTAGGAAGCTGCAAACGCGGTCGCAGACCTGGTTGGAGTCAAGAGAATACACAAAGCACTTGATTAGAGTCGAAAATTGGATATTCAGGAACCCTGGCTTCGCGTTAGCAGCAGCTGCCATCGCTTGGCTTTTG... | [
0.807017,
0.003168,
0.28429899999999997,
0.096625,
0.245188,
0.161653,
0.19259,
0.54651,
0.293867,
0.036499,
-0.202066,
0.913963,
1.310005,
2.020288,
-0.06422599999999999,
0.536982,
0.075069,
-0.0015819999999999999,
1.4960769999999999,
0.19378099999999998,
0.177079,
0.08959... | [
575,
576,
577,
578,
579,
580,
581,
582,
583,
584,
585,
586,
587,
588,
589,
590,
591,
592,
593,
594,
595,
596,
597,
598,
599,
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602,
603,
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605,
606,
607,
608,
609,
610,
611,
612,
613,
614,
615,
616,
617,
618,
619,
6... | viral_gRNA | Huber, 2019 in virion |
Huber (2019), ZSIN | GAATCAGACTGCGACAGTTCGAGTTTGAAGCGAAAGCTAGCAACAGTATCAACAGGTTTTATTTTGGATTTGGAAACGAGAGTTTCTGGTCATGAAAAACCCAAAAAAGAAATCCGGAGGATTCCGGATTGTCAATATGCTAAAACGCGGAGTAGCCCGTGTGAGCCCCTTTGGGGGCTTGAAGAGGCTGCCAGCCGGACTTCTGCTGGGTCATGGGCCCATCAGGATGGTCTTGGCGATTCTAGCCTTTTTGAGGTTCACGGCAATCAAGCCATCACTGGGTCTCATCAATAGATGGGGTTCAGTGGGGAAAAAAGAGG... | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
-0.937507,
null,
null,
null,
null,
0.5842849999999999,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
1.183294,
null,
0.34823099999999996,
-0.188409,
-0.918416,
0.68149,
2.6837429... | [
0,
1,
2,
3,
4,
5,
6,
7,
8,
9,
10,
11,
12,
13,
14,
15,
16,
17,
18,
19,
20,
21,
22,
23,
24,
25,
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27,
28,
29,
30,
31,
32,
33,
34,
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36,
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38,
39,
40,
41,
42,
43,
44,
45,
46,
47,
48,
49,
50,
51,
52,
53,
54... | viral_gRNA | Huber, 2019 in virion |
Huber (2019), ZSIN | CTTGCATCCTGGAGCTGGGAAAACCAGGAGAGTTCTTCCTGAAATAGTCCGTGAAGCCATAAAAACAAGACTCCGTACTGTGATCTTAGCTCCAACTAGGGTTGTCGCTGCTGAAATGGAGGAAGCCCTTAGAGGGCTTCCAGTGCGTTATATGACAACAGCAGTCAATGTCACCCACTCTGGGACAGAAATCGTTGACTTAATGTGCCATGCCACCTTCACTTCACGTCTACTACAGCCAATCAGAGTCCCCAACTATAATCTGTATATTATGGATGAGGCCCACTTCACAGATCCCTCAAGTATAGCAGCAAGAGGAT... | [
0.43090399999999995,
0.138391,
0.43534599999999996,
-0.015507,
-0.06472599999999999,
0.978459,
0.112095,
-0.03368,
0.343912,
0.14926399999999998,
-0.036581999999999996,
0.043132,
0.39155799999999996,
0.043882,
0.09712499999999999,
0.048171,
-0.002774,
-0.02638,
0.328436,
0.1734... | [
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5208,
5209,
5210,
5211,
5212,
5213,
5214... | viral_gRNA | Huber, 2019 in virion |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | TGAGGATATGGAGATCGACGACGAGTTAGTATGGATCCATCCGGACAGTTGCCTGAAGGGAAGAAAGGGATTCAGTACTACAAAAGGAAAGTTGTATTCGTACTTTGAAGGCACCAAATTCCATCAAGCAGCAAAAGATATGGCGGAGATAAAGGTCCTGTTCCCAAATGACCAGGAAAGCAACGAGCAACTGTGTGCCTACATATTGGGGGAGACCATGGAAGCAATCCGCGAAAAATGCCCGGTCGACCACAACCCGTCGTCTAGCCCGCCAAAAACGCTGCCGTGCCTCTGCATGTATGCCATGACGCCAGAAAGGG... | [
0.9210300000000001,
0.6040209999999999,
0.9627319999999999,
0.544376,
0.5445019999999999,
0.6712969999999999,
0.7737149999999999,
1.055666,
1.514694,
0.567786,
0.494036,
0.890878,
0.618339,
1.072465,
1.153606,
1.5847900000000001,
0.093993,
0.131539,
0.093536,
0.175818,
0.1733... | [
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4626,
4627,
4628,
4629,
4630,
4631,
4632,
4633,
4634,
4635,
4636,
4637,
4638,
4639... | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | TGAACGTCCTACTGACCCGTACGGAGGACCGTATCGTGTGGAAAACACTAGCCGGCGATCCATGGATAAAAACACTGACGGCCAAGTATCCTGGGAATTTCACTGCCACGATAGAGGAATGGCAAGCAGAGCATGAGGCCATCATGAGGCACATCTTGGAGAGACCGGACCCTACCGACGTATTCCAGAATAAGGCGAACGTGTGTTGGGCCAAGGCCTTGGTGCCGGTACTGAAAACTGCAGGCATAGATATGACCACTGAACAATGGAACACTGTGGATTATTTCGAAACGGACAAAGCTCACTCAGCAGAGATAGTA... | [
0.174887861,
0.400022555,
0.17019024900000002,
0.579019756,
0.28178047900000003,
0.21506771600000002,
0.17275178200000002,
0.211037255,
0.28413103100000003,
0.22417883100000002,
0.9772040030000001,
0.41724309,
0.38610239100000004,
0.9685540810000001,
0.6869575210000001,
0.075443746,
... | [
2875,
2876,
2877,
2878,
2879,
2880,
2881,
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2884,
2885,
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2900,
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2902,
2903,
2904,
2905,
2906,
2907,
2908,
2909,
2910,
2911,
2912,
2913,
2914... | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | TTGATGTCACGGACATCTCACTGGACATGGAAGACAGTAGCGAAGGCTCACTCTTTTCGAGCTTTAGCGGATCGGACAACTCTATTACTAGTATGGACAGTTGGTCGTCAGGACCTAGTTCACTAGAGATAGTAGACCGAAGGCAGGTGGTGGTGGCTGACGTCCATGCCGTCCAAGAGCCTGCCCCTGTTCCACCGCCAAGGCTAAAGAAGATGGCCCGCCTGGCAGCGGCAAGAATGCAGGAAGAGCCAACTCCACCGGCAAGCACCAGCTCTGCGGACGAGTCCCTTCACCTTTCTTTTGGTGGGGTATCCATGTCC... | [
1.95909,
1.95007,
1.348423,
0.61134,
0.11122499999999999,
0.10840599999999999,
0.19802000000000003,
0.976194,
0.963004,
1.002463,
1.292663,
0.621467,
0.38550799999999996,
0.118989,
0.6987829999999999,
0.22646899999999998,
0.9186479999999999,
1.319279,
0.942128,
1.503955,
1.12... | [
5175,
5176,
5177,
5178,
5179,
5180,
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5182,
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5184,
5185,
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5202,
5203,
5204,
5205,
5206,
5207,
5208,
5209,
5210,
5211,
5212,
5213,
5214... | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | AGGACCGAATACTGACTAACCGGGGTAGGTGGGTACATATTTTCGACGGACACAGGCCCTGGGCACTTGCAAAAGAAGTCCGTTCTGCAGAACCAGCTTACAGAACCGACCTTGGAGCGCAATGTTCTGGAAAGAATCTACGCCCCGGTGCTCGACACGTCGAAAGAGGAACAGCTCAAACTCAGGTACCAGATGATGCCCACCGAAGCCAACAAAAGCAGGTACCAGTCTAGAAAAGTAGAAAATCAGAAAGCCATAACCACTGAGCGACTGCTTTCAGGGCTACGACTGTATAACTCTGCCACAGATCAGCCAGAATG... | [
0.412632,
0.19060000000000002,
0.218075,
0.247139,
0.16339199999999998,
0.346503,
0.302292,
0.5230739999999999,
0.135103,
0.855594,
0.9566549999999999,
1.099592,
0.668624,
1.3610579999999999,
0.6830109999999999,
0.746563,
2.065112,
1.285117,
0.9035059999999999,
0.442609,
0.34... | [
5750,
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5778,
5779,
5780,
5781,
5782,
5783,
5784,
5785,
5786,
5787,
5788,
5789... | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | CATCCGCAGTGCGGTTCCATCAGCGATGCAGAACACGTTGCAAAACGTGCTCATTGCCGCGACTAAAAGAAACTGCAACGTCACACAAATGCGTGAATTGCCAACACTGGACTCAGCGACATTCAACGTTGAATGCTTTCGAAAATATGCATGTAATGACGAGTATTGGGAGGAGTTTGCCCGAAAGCCAATTAGGATCACTACTGAGTTCGTTACCGCATACGTGGCCAGACTGAAAGGCCCTAAGGCCGCCGCACTGTTCGCAAAGACGCATAATTTGGTCCCATTGCAAGAAGTGCCTATGGATAGGTTCGTCATGG... | [
1.14684,
0.9496819999999999,
0.451851,
1.090299,
0.5035379999999999,
0.138209,
0.161207,
0.27449399999999996,
0.255129,
0.11089199999999999,
0.062494999999999995,
0.37272000000000005,
0.13475399999999998,
0.120873,
0.328405,
0.40534499999999996,
1.078443,
0.21567699999999998,
1.4... | [
6325,
6326,
6327,
6328,
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6330,
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6355,
6356,
6357,
6358,
6359,
6360,
6361,
6362,
6363,
6364... | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | CGTTCGACAAAAGCCAAGACGACGCTATGGCGTTAACTGGCCTGATGATCTTGGAAGACCTGGGTGTGGACCAACCACTACTCGACTTGATCGAGTGCGCCTTTGGAGAAATATCATCCACCCATCTGCCCACGGGTACCCGTTTCAAATTCGGGGCGATGATGAAATCCGGAATGTTCCTCACGCTCTTTGTCAACACAGTTCTGAATGTCGTTATCGCCAGCAGAGTATTGGAGGAGCGGCTTAAAACGTCCAAATGTGCAGCATTTATCGGCGACGACAACATCATACACGGAGTAGTATCTGACAAAGAAATGGCT... | [
0.543763,
0.49690399999999996,
0.723258,
1.123867,
0.47927000000000003,
1.291617,
0.9715539999999999,
0.988294,
0.523675,
1.568065,
0.43759899999999996,
0.246573,
0.19567299999999999,
0.23110599999999998,
0.227963,
0.44285199999999997,
0.667276,
0.6054900000000001,
0.730958999999... | [
6900,
6901,
6902,
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6927,
6928,
6929,
6930,
6931,
6932,
6933,
6934,
6935,
6936,
6937,
6938,
6939... | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | TTAGCAGTGGCCGTGGCAACTCGGTATGAGGTAGACAACATCACACCTGTCCTGCTGGCATTGAGAACTTTTGCCCAGAGCAAAAGAGCATTTCAAGCCATCAGAGGGGAAATAAAGCATCTCTACGGTGGTCCTAAATAGTCAGCATAGCACATTTCATCTGACTAATACCACAACACCACCACCATGAATAGAGGATTCTTTAACATGCTCGGCCGCCGCCCCTTCCCGGCCCCCACTGCCATGTGGAGGCCGCGGAGAAGGAGGCAGGCGGCCCCGATGCCTGCCCGCAATGGGCTGGCTTCCCAAATCCAGCAACT... | [
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1.175434,
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0.7284849999999999,
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0.273144,
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0.06407299999999999,
0.155654,
1.324211,
0.987343,
1.287998,
0.8161,
0... | [
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7502,
7503,
7504,
7505,
7506,
7507,
7508,
7509,
7510,
7511,
7512,
7513,
7514... | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | CGTCCGGCAGAAGTAAAAGAAGCGTCACTGACGACTTTACCTTGACCAGCCCGTACTTGGGCACATGCTCGTACTGTCACCATACTGAACCGTGCTTTAGCCCGATTAAGATCGAGCAGGTCTGGGATGAAGCGGACGACAACACCATACGCATACAGACTTCCGCCCAGTTTGGATACGACCAAAGCGGAGCAGCAAGCTCAAATAAGTACCGCTACATGTCGCTCGAGCAGGATCATACTGTCAAAGAAGGCACCATGGATGACATCAAGATCAGCACCTCAGGACCGTGTAGAAGGCTTAGCTACAAAGGATACTTT... | [
0.5545169999999999,
0.51639,
0.12808899999999998,
0.35240699999999997,
0.252843,
0.2735,
0.046418999999999995,
0.342468,
0.609533,
0.9909600000000001,
0.785339,
0.375324,
0.44657399999999997,
1.1847239999999999,
0.9549449999999999,
0.969202,
0.847444,
0.769511,
1.2495829999999999... | [
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8657,
8658,
8659,
8660,
8661,
8662,
8663,
8664... | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | AAAGTCTACGCGAAGCCACCATCCGGAAAGAACATTACGTACGAGTGCAAGTGCGGCGATTACAAGACCGGTACCGTTACGACCCGTACCGAAATCACGGGCTGCACCGCCATCAAGCAGTGCGTCGCCTATAAGAGCGACCAAACGAAGTGGGTCTTCAATTCGCCGGACTTGATCAGACATGCCGACCACACGGCCCAAGGGAAATTGCATTTACCTTTCAAGCTGATCCCGAGTACCTGCATGGTCCCTGTTGCCCACGCGCCGAACGTAGTACACGGCTTTAAACACATCAGCCTCCAATTAGACACAGACCACCT... | [
0.322886,
0.5032829999999999,
0.49233000000000005,
0.26367199999999996,
0.055071999999999996,
0.293912,
1.428979,
0.7158359999999999,
0.685812,
0.34019299999999997,
0.304035,
0.618267,
0.452547,
0.504274,
0.366684,
0.198483,
0.396619,
0.892749,
0.264928,
0.25302199999999997,
... | [
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9230,
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9232,
9233,
9234,
9235,
9236,
9237,
9238,
9239... | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | GATGATGATTGGCGTAACTGTTGCAGCATTATGTGCCTGTAAAGCGCGCCGTGAGTGCCTGACGCCATATGCCCTGGCCCCAAATGCCGTGATTCCAACTTCGCTGGCACTTTTGTGCTGTGTTAGGTCGGCTAATGCTGAAACATTCACCGAGACCATGAGTTACCTATGGTCGAACAGCCAGCCATTCTTCTGGGTCCAGCTGTGTATACCCCTGGCCGCTGTCATCGTTCTAATGCGCTGTTGCTCATGCTGCCTGCCTTTTTTAGTGGTTGCCGGCGCCTACCTGGCGAAGGTAGACGCCTACGAACATGCGACCA... | [
0.405462,
0.427952,
0.559059,
0.334254,
0.578094,
0.16508799999999998,
0.138217,
0.909592,
0.291398,
1.112792,
0.31560299999999997,
0.10668599999999999,
0.291566,
0.5007469999999999,
1.134832,
0.972391,
0.6425409999999999,
0.641269,
0.706436,
0.331633,
0.48050299999999996,
... | [
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9781,
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9803,
9804,
9805,
9806,
9807,
9808,
9809,
9810,
9811,
9812,
9813,
9814... | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | GAGCACAATGTTTTTGCGACAGTGAGAACAGCCAGATGAGTGAGGCGTACGTCGAATTGTCAGCAGATTGCGCGACTGACCACGCGCAGGCGATTAAGGTGCATACTGCCGCGATGAAAGTAGGACTACGTATAGTGTACGGGAACACTACCAGTTTCCTAGATGTGTACGTGAACGGAGTCACACCAGGAACGTCTAAAGACCTGAAAGTCATAGCTGGACCAATTTCAGCATCGTTTACACCATTCGATCACAAGGTCGTTATCCATCGCGGCCTGGTGTACAACTATGACTTCCCGGAATACGGAGCGATGAAACCA... | [
0.06625299999999999,
0.427679,
0.41262499999999996,
0.155838,
0.253891,
0.160966,
0.586145,
0.546304,
0.726972,
0.302765,
0.144249,
0.17113599999999998,
0.126376,
0.129289,
0.15154499999999999,
0.09529000000000001,
0.309755,
0.28309,
0.269901,
0.224441,
0.097247,
0.03620599... | [
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1... | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | CCGAACGCTGCCTTTATCAGGACATCAGATGCACCACTGGTCTCAACAGTCAAATGTGATGTCAGTGAGTGCACTTACTCAGCGGACTTCGGCGGGATGGCTACCCTGCAGTATGTATCCGACCGCGAAGGACAATGCCCTGTACATTCGCATTCGAGCACAGCAACCCTCCAAGAGTCGACAGTTCATGTCCTGGAGAAAGGAGCGGTGACAGTACACTTCAGCACCGCGAGCCCACAGGCGAACTTTATTGTATCGCTGTGTGGTAAGAAGACAACATGCAATGCAGAATGCAAACCACCAGCTGACCATATCGTGAG... | [
0.22398099999999999,
0.098273,
0.331231,
0.665405,
0.702392,
0.8179259999999999,
0.295996,
0.22120499999999998,
0.430809,
0.561326,
0.22694000000000003,
0.08363899999999999,
0.793779,
2.287522,
1.3242559999999999,
1.576335,
1.620647,
1.024487,
0.493907,
0.184086,
0.4784629999... | [
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1... | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | GGCAATATAGCAACACCAAAACTCGACGTATTTCCGAGGAAGCGCAGTGCATAATGCTGCGCAGTGTTGCCAAATAATCACTATATTAACCATTTATTCAGCGGACGCCAAAACTCAATGTATTTCTGAGGAAGCATGGTGCATAATGCCATGCAGCGTCTGCATAACTTTTTATTATTTCTTTTATTAATCAACAAAATTTTGTTTTTAACATTTC | [
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0.200421,
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0.995497,
1... | [
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11533,
11534,
1... | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | CGACAATTCACCCCGCATCATCTGAATTGTGTGATTTCGTCCGTGTACGAGGGTACAAGAGACGGAGTTGGAGCCGCACCGTCATACCGCACTAAAAGGGAGAACATTGCTGATTGTCAAGAGGAAGCAGTTGTCAATGCAGCCAATCCGCTGGGCAGACCAGGCGAAGGAGTCTGCCGTGCCATCTATAAACGTTGGCCGAACAGTTTCACCGATTCAGCCACAGAGACCGGCACCGCAAAACTGACTGTGTGCCAAGGAAAGAAAGTGATCCACGCGGTTGGCCCTGATTTCCGGAAACACCCAGAGGCAGAAGCCCT... | [
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0.28012000000000004,
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0.639663,
0.033111999999999996,
1.027976,
1.444061,
0.384466,
0.732076,
0.147589,
0.821685,
1.062808,
0.22275799999999998,
0.366734,
0.269426,
0.9818349999999999,... | [
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4055,
4056,
4057,
4058,
4059,
4060,
4061,
4062,
4063,
4064... | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | CTTTGACACCACCCCTTTTATGTTTAAGAACTTGGCTGGAGCATATCCATCATACTCTACCAACTGGGCCGACGAAACCGTGTTAACGGCTCGTAACATAGGCCTGTGCAGCTCCGACGTCATGGAGCGGTCACGTAGAGGGATGTCCATTCTTAGGAAGAAGTATTTGAAACCATCCAATAATGTCCTATTCTCTGTTGGCTCGACCATCTACCACGAGAAGAGGGACTTACTGAGGAGCTGGCACCTGCCGTCTGTATTTCACTTACGTGGCAAGCAAAATTACACATGTCGGTGTGAGACTATAGTTAGTTGCGACG... | [
null,
0.8287764950000001,
1.156954918,
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0.20351944600000002,
0.22339429600000002,
0.037956748000000005,
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0.360652348,
0.151478251,
0.413692742,
1.00166225,
1.52180334,
0.953916453,
1.9... | [
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619,
6... | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | AATAAGGGACGTCAAGAAAATGAAAGGGCTGGACGTCAATGCCAGAACTGTGGACTCAGTGCTCTTGAATGGATGCAAACACCCCGTAGAGACCCTGTATATTGACGAAGCTTTTGCTTGTCATGCAGGCACTCTCAGAGCGCTCATAGCCATCATAAGACCTAAAAAGGCAGTGCTCTGCGGGGATCCAAAACAGTGCGGCTTTTTTAACATGATGTGCCTGAAAGTGCATTTTAACCACGAGATTTGCACGCAGGTCTTCCACAAAAGCATCTCTCGTCGTTGCACTAAATCTGTGACTTCGGTCGTCTCAACCTTGT... | [
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1.231492149,
0.47029833,
1.055949,
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0.213297014,
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0.105406184,
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0.32206083500000005,
2.49708116,
0.388752721,
0.8808238700000001,
2.999376975,
1.437925607,
2.053... | [
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2330,
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2332,
2333,
2334,
2335,
2336,
2337,
2338,
2339... | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | GTGCTTTCTCCACAGGCTGTACTCAAGAGTGAGAAACTATCTTGCATTCACCCTCTCGCTGAACAAGTCATAGTGATAACACACTCTGGCCGAAAAGGGCGTTATGCCGTGGAACCCTATCATGGAAAAGTAGTGGTGCCAGAGGGACATGCAATACCCGTCCAGGACTTTCAAGCTCTGAGTGAAAGTGCCACCATTGTGTACAACGAACGAGAGTTCGTAAACAGGTATTTGCACCATATTGCCACACATGGAGGAGCGCTGAACACAGATGAAGAATATTACAAAATTGTCAAGCCCAGCGAGCACGACGGCGAATA... | [
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0.307676353,
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0.531741463,
0.511984102,
0.36380116500000004,
0.220940522,
0.053041895000000006,
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0.47430315700000003,
0.15626419300000002,
0.392434261,
0.287625344,
0.11129519800000001,
0.09483651900000001... | [
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1759,
1760,
1761,
1762,
1763,
1764... | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | GGCCATGGAAGGAAAGGTAATGAAACCACTCCACGTGAAAGGAACTATTGACCACCCTGTGCTATCAAAGCTCAAATTCACCAAGTCGTCAGCATACGACATGGAGTTCGCACAGTTGCCGGTCAACATGAGAAGTGAGGCGTTCACCTACACCAGCGAACACCCTGAAGGGTTTTACAACTGGCACCACGGAGCGGTGCAGTATAGTGGAGGTAGATTTACCATCCCCCGCGGAGTAGGAGGCAGAGGAGACAGTGGTCGTCCGATTATGGATAACTCAGGCCGGGTTGTCGCGATAGTCCTCGGAGGGGCTGATGAGG... | [
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0.515451,
1.089344,
0.174696,
0.27815,
0.700202,
1.024839,
0.82766299999999... | [
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8080,
8081,
8082,
8083,
8084,
8085,
8086,
8087,
8088,
8089... | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | ATGGGCGGCGCATGAGAGAAGCCCACACCAATTACCTACCCAAAAATGGAGAAAGTTCACGTTGACATCGAGGAAGACAGCCCATTCCTCAGAGCTTTGCAACGGAGCTTCCCGCAGTTTGAGGTAGAAGCCAAGCAGGTCACTGATAATGACCATGCTAATGCCAGAGCGTTTTCGCATCTGGCTTCAAAACTGATCGAAACGGAGGTGGACCCATCCGACACGATCCTTGACATTGGAAGTGCGCCCGCCCGCAGAATGTATTCTAAGCATAAGTATCATTGCATCTGTCCGATGAGATGTGCGGAAGATCCGGACAG... | [
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null,
null,
null,
0.49412655200000005,
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0.24290334,
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0.133142273,
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0.32327252100000003,
-0.28729586100000004,
0.560976629,
-0.319762492,
0.527116192,
1.281911568,
0.132134317,... | [
0,
1,
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43,
44,
45,
46,
47,
48,
49,
50,
51,
52,
53,
54... | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | ACGGTCGCACCCAAAGAAACACCAATACCATGAAGAATTATCTTTTGCCCGTAGTGGCCCAGGCATTTGCTAGGTGGGCAAAAGAATATAAGGAAGATCAAGAAGATGAGAGGCCACTAGGACTACGAGATAGACAATTAGTTATGGGGTGCTGCTGGGCTTTTAGAAGGCACAAGATAACATCTATTTATAAGCGCCCAGATACCCAAACCATCATCAAAGTGAACAGCGATTTCCACTCATTTGTGCTGCCCAGGATAGGCAGTAACACATTGGAGATCGGGCTGAGAACAAGAATCAGGAAAATGCTAGAAGAGCGC... | [
0.26037213,
1.414399141,
0.16490918100000002,
-0.0017481520000000002,
0.124981747,
0.051293589,
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0.400785614,
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0.244501342,
0.072671344,
0.201034195,
0.7432814940000001,
1.91912781,
1.017646207,
1.171080886,
0.5339765670000001,
0.9907898220000001,
... | [
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1185,
1186,
1187,
1188,
1189... | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | AGCGGAAAGAAAGAAAACTGCCGCGAAATTGAGGCCGATGTGCTACGGCTGAGGGGCATGCAGATCACGTCGAAGACAGTGGATTCGGTTATGCTCAACGGATGCCACAAAGCCGTAGAAGTGCTGTATGTTGACGAAGCGTTCGCGTGCCACGCAGGAGCACTACTTGCCTTGATTGCAATCGTCAGACCCCGTAAGAAGGTAGTGCTATGCGGAGACCCTAAGCAATGCGGATTCTTCAACATGATGCAACTAAAGGTATATTTCAACCACCCGGAAAAAGACATATGTACCAAGACATTCTACAAGTTTATCTCCCG... | [
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0.221662,
0.356987,
0.576923,
0.22791399999999998,
1.035103,
1.341159,
1.668621,
0.412427,
1.25234,
0.283872,
1.113887,
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1.08932,
0.722667,
0.555747,
0.456014,
0.515424,
0.16379000000000002,
-0.105447,
0.082786,
0.201242,
0.99407... | [
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2328,
2329,
2330,
2331,
2332,
2333,
2334,
2335,
2336,
2337,
2338,
2339... | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | ACGGTCAAGTATTCGGCCAGCAAGTCAGGCAAGTGCGCAGTCCATGTGCCATCAGGGACTGCTACCCTAAAAGAAGCAGCAGTCGAGCTAACCGAGCAAGGGTCGGTGACCATTCATTTCTCGACCGCAAATATCCACCCGGAGTTCAGGCTCCAAATATGCACATCATATGTCACGTGCAAAGGTGATTGTCACCCCCCGAAAGACCACATTGTGACACACCCCCAGTATCACGCCCAAACATTTACAGCCGCGGTGTCAAAAACCGCGTGGACGTGGTTAACATCCCTGCTGGGAGGATCGGCCGTAATTATTATAAT... | [
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-0.013888221000000001,
0.049837315,
0.127230661,
0.13290891600000002,
0.193568825,
0.37553514600000004,
0.648195056,
0.9421533400000001,
0.228698529,
1.251360099,
0.26782995800000003,
0.279741397,
0.15689413500000002,
0.35187349100000004,
0.056308776000000005,
0.153588084... | [
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1... | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | ACACAGCCTCAGTGCAGGCGTTCCTCAACATCACCGTGGGAGAACACTCCATTGTGACCACTGTGTATGTGAATGGAGAAACTCCTGTGAACTTCAATGGGGTCAAATTAACTGCAGGTCCACTTTCCACAGCTTGGACACCTTTTGACCGCAAAATCGTGCAGTATGCCGGGGAGATCTATAATTACGACTTTCCTGAGTATGGGGCAGGACAACCAGGAGCATTTGGAGACATACAATCCAGAACAGTCTCAAGCTCAGATCTGTACGCCAATACCAATCTAGTGCTGCAGAGACCCAAAGCAGGAGCGATCCATGTG... | [
1.296383606,
0.34290743500000004,
0.16051947500000002,
0.269818235,
0.308510873,
0.19101163300000001,
0.082557276,
0.440405325,
0.32333549100000003,
0.421089458,
0.594558182,
3.121560795,
0.28386604800000004,
0.558085799,
0.23079316,
0.37804636,
0.436901633,
0.209331453,
0.117664... | [
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10380,
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10382,
10383,
10384,
1... | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | GGCTGTGCTTTGCTGCGCCCGTACTGCCCGGGCCGAGACCACCTGGGAGTCCTTGGATCACCTATGGAACAATAACCAACAGATGTTCTGGATCCAATTGCTGATCCCTCTGGCCGCCTTGATTGTAGTGACTCGCCTGCTCAAGTGCGTGTGCTGTGTAGTGCCTTTTTTAGTCGTGGCCGGCGCCGCAGGCGCCGGCGCCTACGAGCACGCGACCACGATGCCGAGCCAAGCGGGAATCTCGTATAACACCATAGTCAACAGAGCAGGCTACGCGCCACTCCCTATCAGCATAACACCGACAAAGATCAAGCTGATAC... | [
0.25695207200000003,
0.099963828,
0.301149092,
0.7339297100000001,
0.820870969,
0.314556915,
0.425202104,
0.25173821900000004,
0.27921052,
0.677122886,
0.399107871,
0.29872313100000003,
0.785547254,
0.349233693,
0.375072532,
0.09253162100000001,
0.193284314,
0.13950737700000002,
... | [
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9805,
9806,
9807,
9808,
9809,
9810,
9811,
9812,
9813,
9814... | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | ACAAAGAAGGAGCAGTGCAGAGCATATCGATTGCAGAACGACAAATGGGTGTATAATTCTGACAAACTGCCCAAAGCTGCGGGAGCCACCCTAAAAGGAAAATTACACGTCCCATTCTTGCTGGCAGACGGCAAATGTACTGTGCCTCTGGCACCAGAACCTATGATAACCTTCGGTTTCCGATCAGTGTCACTGAAACTGCACCCTAAGAATCCCACATATTTGACCACTCGCCAACTTGCTGATGAGCCTCATTACACGCACGAGCTCATATCTGAACCAGCTGTTAGGAATTTTACCGTCACTGAAAAGGGGTGGGA... | [
0.42174696300000003,
0.391912666,
0.43755830500000004,
1.447788562,
0.20968517,
3.022222592,
0.415843438,
2.003228806,
0.753800055,
0.526393113,
0.740673114,
0.21372929400000001,
0.838618446,
0.49030557700000005,
0.335977766,
0.23864575100000002,
0.29825246,
0.29999521,
0.4386034... | [
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9238,
9239... | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | GTCCAATAGCAATCGAGGCAGTGAAGAGTGACGGGCACGACGGCTATGTTAGACTTCAGACTTCCTCGCAGTACGGCCTGGACTCCTCTGGCAACTTAAAAGGAAGGACCATGCGGTATGACATGCACGGGACCATTGAAGAGATACCGCTACATCAAGTGTCACTCCACACATCTCGCCCGTGTCACATTGTGGATGGGCATGGTTATTTTCTACTTGCTAGGTGCCCGGCAGGGGACTCCATCACCATGGAATTTAAGAAAAATTCAGTCACACACTCCTGCTCAGTGCCGTATGAAGTGAAATTTAATCCTGTAGGC... | [
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0.48016023900000004,
0.277575514,
0.34025467400000003,
0.493427993,
0.745593201,
0.361187949,
1.155319363,
1.080575392,
0.5798116999999999,
0.678904146,
0.561188368,
1.470371798,
0.602217294,
1.519811763,
1.541547207,
0.166322667,
0.128342848,
0.348023214,
0.280891... | [
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8660,
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8662,
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8664... | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | CAAATATGATCTTGAGTATGCAGATGTGCCACAGAACATGCGGGCCGATACATTCAAGTACACCCATGAGAAGCCCCAAGGCTATTACAGCTGGCATCATGGAGCAGTCCAATATGAAAATGGGCGTTTCACGGTGCCAAAAGGAGTTGGGGCCAAGGGAGACAGCGGACGACCCATTCTGGATAATCAGGGACGGGTGGTCGCTATTGTGCTGGGAGGTGTGAATGAAGGATCTAGGACAGCCCTTTCAGTCGTCATGTGGAACGAGAAGGGAGTAACTGTGAAGTATACTCCGGAGAACTGCGAGCAATGGTCACTAG... | [
0.347696981,
0.336006686,
1.266019676,
0.665296058,
1.990082302,
1.812269484,
1.437754344,
1.072592524,
0.386537562,
0.268183563,
0.32233805200000004,
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0.252530109,
0.352265117,
0.46696253400000004,
1.7503490240000001,
0.8925892310000001,
1.033789565,
1.002792... | [
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8082,
8083,
8084,
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8086,
8087,
8088,
8089... | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | AGGGGCCCCTATAACTCTCTACGGCTAACCTGAATGGACTACGACATAGTCTAGTCCGCCAAGATGTTCCCGTTCCAACCAATGTATCCGATGCAGCCAATGCCCTATCGCAATCCATTCGCGGCCCCGCGCAGGCCCTGGTTCCCCAGAACTGACCCTTTTCTGGCGATGCAGGTGCAGGAATTAACCCGCTCGATGGCTAACCTGACGTTCAAGCAACGCCGGGACGCGCCACCTGAGGGGCCACCCGCTAAGAAACCGAAGAGGGAGGCCCCGCAAAAACAGAAAGGGGGAGGCCAAGGGAAGAAGAAGAAGAACCC... | [
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0.42218404200000004,
0.41078372,
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0.237306695,
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0.119478677,
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0.549378864,
0.8069957,
1.672610352,
0.5909859660000001,
0.163965369,
1.039217692,
0.28119066,
0.22351953200000002,
0.15322443500000002,
0.0940575090000000... | [
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7507,
7508,
7509,
7510,
7511,
7512,
7513,
7514... | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | GGCGAAATATCATCAATACATTTGCCCACCAAAACTAAATTTAAATTCGGAGCCATGATGAAATCCGGAATGTTCCTCACACTGTTTGTGAACACAGTCATCAACATTGTAATCGCAAGCAGAGTGTTAAGAGAGCGGCTAACCGGATCACCATGTGCAGCATTCATTGGAGATGACAACATCGTGAAAGGAGTCAAATCTGACAAATTAATGGCCGACAGGTGCGCCACTTGGTTGAACATGGAGGTCAAGATCATAGACGCCGTGGTGGGCGAGAAAGCGCCCTATTTCTGTGGAGGGTTTATTTTGTGTGACACCGT... | [
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0.17307539700000002,
0.346159488,
1.013244286,
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2.089093668,
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0.207923875,
0.473559916,
0.321731671,
1.319152781,
0.435866311,
0.636839221,
2.621921526,
1.6... | [
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6932,
6933,
6934,
6935,
6936,
6937,
6938,
6939... | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | TATTGGATTCGGCTGCCTTTAATGTGGAATGCTTCAAGAAATATGCGTGCAACAATGAATATTGGGAAACGTTCAAAGAAAACCCCATCAGGCTTACTGAAGAAAATGTGATAAATTACATTACTAAATTAAAAGGACCAAAAGCTGCTGCTCTTTTTGCGAAGACACATAATTTGAATATGTTACAGGACATACCAATGGACAGGTTTGTAATGGACTTAAAGAGGGACGTGAAAGTGACTCCAGGAACAAAACATACTGAAGAACGGCCAAAGGTACAGGTGATACAGGCTGCCGATCCGCTAGCGACAGCGTACTTG... | [
0.236313089,
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0.38166271500000004,
0.54573602,
0.43571662600000005,
0.659242163,
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0.126940532,
0.389910633,
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0.5662238740000001,
0.29615996,
0.566990522,
0.267886568,
0.207843781,
0.141186642,
0.553734081,
0.79458464... | [
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6364... | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | AGTGGTGTTGGAGAGGACCGAATTGGAGATTTCGTATGCCCCGCGCCTCGACCAAGAAAAAGAAGAACTACTACGCAAGAAATTACAGCTGAATCCCACACCTGCTAACAGAAGCAGATACCAGTCCAGGAGGGTGGAGAACATGAAAGCCATAACAGCTAGACGTATTCTGCAAGGCCTAGGGCACTATTTGAAGGCAGAAGGAAAAGTGGAGTGCTATCGAACCCTGCATCCTGTTCCTTTGTATTCATCTAGTGTGAATCGTGCTTTTTCAAGCCCCAAGGTCGCAGTGGAAGCCTGCAATGCTATGCTGAAAGAAA... | [
1.143775649,
0.9208822860000001,
0.9572437680000001,
0.5447348780000001,
0.34348141200000004,
0.330170878,
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0.46398687200000005,
0.324599566,
0.73880216,
0.24958228600000001,
0.748203273,
0.472331141,
1.673748553,
0.660414425,
-0.09626316300000001,
0.154533782,
-0.024034... | [
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5782,
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5787,
5788,
5789... | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | ACCCACCAGGTGCTGCAAGTCGAGGCAGACATTCACGGGCCGCCTTCTGTATCCAGCTCATCCTGGTCCATTCCTCATGCATCCGACTTTGATGTGGACAGTTTATCCATCCTTGACACCCTGGAGGGAACTAGCGTGACCAGCGAGGCAGCGTCAGCCGAGACTAACTCCTACTTCGCAAGTAGCATGGAGTTTCTGGCGCGACCGGTACCTGCGCCTCGAACAGTATTCAGGAATCTTCCTCACCCCGCTCCACGCACAAGAACACCGTCACTTGCACCTTGCAGGGCCAGTTCGGGAACTAGCCTAGTTTCCACCCC... | [
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0.055755007,
0.36518083100000004,
0.488821214,
0.887649365,
1... | [
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5210,
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5213,
5214... | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | CTGGAAGGAAGGGCTACAGCACAAGCGATGGCAAGACTTTCTCATATTTGGAAGGGACCAAATTTCACCAGGCGGCCAAGGATATAGCAGAAATTAATGCCATGTGGCCCGTTGCAACGGAGGCCAATGAGCAAGTATGCATGTATATCCTTGGTGAAAGCATGAGCAGCATTAGGTCAAAATGCCCCGTCGAAGAGTCGGAAGCCTCCACACCACCTAGCACGCTGCCTTGCTTGTGCATCCATGCTATGACTCCAGAAAGAGTACAACGCCTAAAAGCCTCACGTCCAGAACAAATTACTGTGTGCTCATCCTTTCCA... | [
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0.22426356700000002,
0.008495714,
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0.225982025,
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0.242795435,
0.22357325900000002,
0.489636846,
0.9745110090000001,
0.6720976980000001,
0.350278339... | [
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4637,
4638,
4639... | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | CGGATGCGCACCCTCTTATCATGTGGTGCGAGGGGATATTGCCACGGCCACCGAAGGAGTGATCATAAATGCTGCTAACAGCAAAGGACAACCTGGCGGAGGGGTGTGCGGAGCGCTGTATAAGAAATTCCCGGAAAGCTTCGATTTACAGCCGATCGAAGTGGGAAAAGCGCGACTGGTCAAAGGTGCAGCTAAGCATATCATTCATGCCGTAGGGCCCAACTTCAACAAAGTTTCGGAAGTTGAAGGTGACAAACAGTTGGCAGAGGCTTATGAGTCCATCGCTAAAATTGTCAACGACAACAATTACAAGTCAGTAG... | [
0.21757525400000002,
0.346014196,
0.48237083700000005,
0.6914042290000001,
1.087671424,
0.24989223100000002,
0.43017377700000003,
0.38382499600000003,
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0.130628368,
0.39327693900000005,
0.122630415,
0.42445938600000005,
0.162010403,
0.39666402900000003,
0.60... | [
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4057,
4058,
4059,
4060,
4061,
4062,
4063,
4064... | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | CCAGTGAACAGAAGACTGCCTCATGCTTTAGTCCTCCACCATAATGAACACCCACAGAGTGACTTTTCTTCATTCGTCAGCAAACTGAAGGGCAGAACTGTCTTGGTGGTCGGGGAGAAGTTGTCCGTCCCAGGCAAAACTGTTGACTGGTTGTCAGACCAGCCTGAGGCTACCTTCAGAGCTCGGCTGGATTTAGGTATTCCAGGTGACGTGCCCAAATACGACATTGTATTTATTAATGTGAGGACTCCATATAAATACCATCATTATCAGCAGTGTGAAGACCACGCCATCAAGCTTAGCATGTTGACCAAGAAAGC... | [
0.26881935100000004,
0.42381599999999997,
0.067195691,
0.574313749,
0.097832495,
1.45251991,
0.46356256,
0.822456882,
0.12390632900000001,
0.26890141700000003,
2.209122854,
1.207514814,
0.40878971700000005,
2.015378489,
0.182490002,
0.57460711,
0.46468189800000004,
0.17904904900000... | [
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3482,
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3484,
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3486,
3487,
3488,
3489... | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | GCACACAGCTTGATTTGCAGACGGGCAGAACTAGAGTTATCTCCGCACAGCATAACTTGGTCCCAGTGAACCGCAATCTCCCGCACGCCTTAGTCCCCGAGCACAAGGAGAAACAACCCGGCCCGGTCAAAAAATTCTTGAGCCAGTTCAAACACCACTCCGTACTTGTGGTCTCAGAGGAAAAAATTGAAGCTCCCCACAAGAGAATCGAATGGATCGCCCCGATTGGCATAGCCGGCGCTGATAAGAACTACAACCTGGCTTTCGGGTTTCCGCCGCAGGCACGGTACGACCTGGTGTTTATCAATATTGGAACTAAA... | [
0.096468,
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0.470267,
0.17501899999999998,
0.220381,
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1.901284,
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0.383563,
0.35589499999999996,
0.6186400000000001,
0... | [
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3481,
3482,
3483,
3484,
3485,
3486,
3487,
3488,
3489... | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | AGTCAATGAAAACCCGCTGTACGCGATCACATCAGAGCATGTGAACGTGCTGCTCACCCGCACTGAGGACAGGCTAGTATGGAAAACTTTACAGGGCGACCCATGGATTAAGCAGCTCACTAACGTACCAAAAGGAAATTTTCAAGCCACCATCGAGGACTGGGAAGCTGAACACAAGGGAATAATTGCTGCGATAAACAGTCCCGCTCCCCGTACCAATCCGTTCAGCTGCAAGACTAACGTTTGCTGGGCGAAAGCACTGGAACCGATACTGGCCACGGCCGGTATCGTACTTACCGGTTGCCAGTGGAGCGAGCTGT... | [
0.279237,
0.24256599999999998,
0.18622000000000002,
0.228269,
0.562975,
1.9593829999999999,
1.460199,
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0.289256,
0.919539,
0.41254799999999997,
0.789984,
0.581371,
1.01999,
0.351835,
0.15038,
0.099007,
0.591285,
0.6353500000000001,
0.7408239999999999,
0.972221,
0.5... | [
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2905,
2906,
2907,
2908,
2909,
2910,
2911,
2912,
2913,
2914... | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | CAAATGACCGTATGATCGGACAGTACATCGTTGTCTCGCCAACCTCTGTGCTGAAGAACGCTAAACTCGCACCAGCACACCCGCTAGCAGACCAGGTTAAGATCATAACGCACTCCGGAAGATCAGGAAGGTATGCAGTCGAACCATACGACGCTAAAGTACTGATGCCAGCAGGAAGTGCCGTACCATGGCCAGAATTCTTAGCACTGAGTGAGAGCGCCACGCTAGTGTACAACGAAAGAGAGTTTGTGAACCGCAAGCTGTACCATATTGCCATGCACGGTCCCGCTAAGAATACAGAAGAGGAGCAGTACAAGGTT... | [
0.327818,
0.453773,
0.262965,
0.56581,
0.56781,
0.23274099999999998,
0.13466,
0.083783,
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0.188516,
0.564278,
1.352776,
1.600121,
0.684908,
1.28091,
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0.489977,
0.733648,
0.315395,
0.417004,
0.253609,
0.6097279999999999,
0.607089,
0.635497,
0... | [
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1758,
1759,
1760,
1761,
1762,
1763,
1764... | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | CCAGCGAATCGTCATTAACGGTAAGACTAACAGGAACACCAATACCATGCAAAATTACCTTCTGCCAATCATTGCACAAGGGTTCAGCAAATGGGCCAAGGAGCGCAAAGAAGACCTTGACAATGAAAAAATGCTGGGTACCAGAGAGCGCAAGCTTACATATGGCTGCTTGTGGGCGTTTCGCACTAAGAAAGTGCACTCGTTCTATCGCCCACCTGGAACGCAGACCATCGTAAAAGTCCCAGCCTCTTTTAGCGCTTTCCCCATGTCATCCGTATGGACTACCTCTTTGCCCATGTCGCTGAGGCAGAAGATAAAAT... | [
0.139511,
0.033271999999999996,
0.20937699999999998,
0.27991099999999997,
0.703723,
1.327672,
1.061893,
1.232273,
1.054646,
0.2848,
0.649265,
0.081178,
1.004154,
1.414566,
0.7393419999999999,
2.461957,
1.53566,
0.669141,
0.431944,
0.13153499999999999,
0.254473,
0.430895,
... | [
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1183,
1184,
1185,
1186,
1187,
1188,
1189... | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | ACCCTGTACTGGATTGGCTTCGATACCACCCAGTTCATGTTCTCGGCTATGGCAGGTTCGTACCCTGCGTACAACACCAACTGGGCCGACGAAAAAGTCCTCGAAGCGCGTAACATCGGACTCTGCAGCACAAAGCTGAGTGAAGGCAGGACAGGAAAGTTGTCGATAATGAGGAAGAAGGAGTTGAAGCCCGGGTCACGGGTTTATTTCTCCGTTGGATCGACACTTTACCCAGAACACAGAGCCAGCTTGCAGAGCTGGCATCTTCCATCGGTGTTCCACCTGAAAGGAAAGCAGTCGTACACTTGCCGCTGTGATAC... | [
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0.260399,
1.09807,
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0.75224,
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0.525354,
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0.6984,
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1.020091,
1.097669,
0.553962,
0.19067099999999998,
0.128055,
0.470447,
1.193554,
0.812419,
0.846201,
0.... | [
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613,
614,
615,
616,
617,
618,
619,
6... | viral_gRNA | Kutchko,2018 |
Kutchko,2018 alphavirus SHAPE(1M7) SSII-Mn(2+) Mut. | ATTGGCGGCGTAGTACACACTATTGAATCAAACAGCCGACCAATTGCACTACCATCACAATGGAGAAGCCAGTAGTTAACGTAGACGTAGACCCGCAGAGTCCGTTTGTCGTGCAACTGCAAAAGAGCTTCCCGCAATTTGAGGTAGTAGCACAGCAGGTCACTCCAAATGACCATGCTAATGCCAGAGCATTTTCGCATCTGGCCAGTAAACTAATCGAGCTGGAGGTTCCTACCACAGCGACGATTTTGGACATAGGCAGCGCACCGGCTCGTAGAATGTTTTCCGAGCACCAGTACCATTGCGTTTGCCCCATGCGT... | [
null,
null,
null,
0,
null,
-0.049518,
0.16819,
null,
-0.25584,
-0.11122299999999999,
0.203648,
0.389658,
0.742671,
1.038944,
0.590922,
0.203639,
0.128097,
0.093666,
0.434795,
0.6250089999999999,
1.635479,
1.604561,
0.49085199999999996,
1.805302,
2.218109,
1.841277,
... | [
0,
1,
2,
3,
4,
5,
6,
7,
8,
9,
10,
11,
12,
13,
14,
15,
16,
17,
18,
19,
20,
21,
22,
23,
24,
25,
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27,
28,
29,
30,
31,
32,
33,
34,
35,
36,
37,
38,
39,
40,
41,
42,
43,
44,
45,
46,
47,
48,
49,
50,
51,
52,
53,
54... | viral_gRNA | Kutchko,2018 |
Lavender,2015 SIV cpz SHAPE(1M7) SSII-Mn(2+) Mut. | TTTTGGGTTTCAGGATCAGAAAATAGATTCTCTGAAACAGGAGGTCAGGAACGAGGAACAGACAGAGAACAGACTGTACCCTCCTTTGGATTCCCTCAAATCTCTCTTTGGCAACGACCCGTTGTCGCAGCAAGAATAGGAGGAGTTATAAAAGAGGTACTATTAGACACAGGGGCAGATGATACAGTACTAGAGGAAATAGAATTAGAGGGAAAATGGAGGCCAAAAATGATAGGGGGAATTGGAGGTTTTATAAAAGTAAGACAATATGATCAGATACCCATAGAAATTTGTGGAAAAAGAGCAATAGGTACAGTATT... | [
0.019447,
0.035169,
0.412218,
0.758158,
-0.009235,
0.206249,
-0.103097,
-0.082089,
0.152748,
0.23211199999999999,
0.17151000000000002,
0.261486,
0.084426,
0.032077999999999995,
0.28653799999999996,
0.179707,
0.208427,
0.440445,
1.189256,
0.658562,
1.894261,
0.753297,
1.42... | [
1725,
1726,
1727,
1728,
1729,
1730,
1731,
1732,
1733,
1734,
1735,
1736,
1737,
1738,
1739,
1740,
1741,
1742,
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1752,
1753,
1754,
1755,
1756,
1757,
1758,
1759,
1760,
1761,
1762,
1763,
1764... | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV cpz SHAPE(1M7) SSII-Mn(2+) Mut. | GGGCTAATCTACTCCCAAAGAAGGCAAGAGATCCTTGATCTCTGGGTCTATCATACACAAGGCTTCTTCCCTGATTGGCAAAACTACACACCAGGACCAGGGGTCAGATACCCGGTGACCTTCGGCTGGTGCTTCAAGCTAGTGCCTGTAGATCCAACAGATGTGGAGGAAGCAAATGAAGGAGACAACAATGTGCTATTACATCCTATGTGCCAGCACGGACAAGAAGATGAACACAGAGAAGTGCTGATGTGGCAGTTTGACAGCCACTTGGCCCTGACACACAGAGCCCGAGAGCTGCATCCGGAGTACTACAAAGA... | [
0.25934399999999996,
0.19119699999999998,
0.36656099999999997,
0.073447,
0.243331,
0.219412,
0.492844,
0.024156999999999998,
0.142507,
0.313176,
0.315227,
0.11719299999999999,
0.147008,
0.0014119999999999998,
-0.064321,
-0.014209,
0.347497,
0.530265,
1.4411909999999999,
2.88322... | [
8625,
8626,
8627,
8628,
8629,
8630,
8631,
8632,
8633,
8634,
8635,
8636,
8637,
8638,
8639,
8640,
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8652,
8653,
8654,
8655,
8656,
8657,
8658,
8659,
8660,
8661,
8662,
8663,
8664... | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV cpz SHAPE(1M7) SSII-Mn(2+) Mut. | GAGAGACTTACTCTGGATAGTGAGGAGGACGCTGGAGATTGTGGGACAGAAGTTCCTCGCAGGACTGAGACTGGTGTGGGAAACCCTAACATACTTGAAGAGCATTCTCCAGTATTGGGGACAAGAGCTGAAAACTAGTGCTATAAGCTTGCTTGACGCCACAGCAATAGCAGTAGCAGAGGGAACAGATAGAATTATAGAAATAGCACAAAGAGTTGGCAGAGGCATTTTGCATATACCTAGAAGAATTAGACAAGGTTTAGAAAGAGCTTTGCTATAAGATGGGAAACAAATGGTCAAAAAGTAGCCTGGTAGGATGG... | [
0.266934,
0.314954,
0.09018799999999999,
0.166395,
0.293637,
0.4182,
0.953828,
1.956736,
1.188109,
1.432284,
0.35618299999999997,
-0.034325,
0.10833699999999999,
0.5219039999999999,
0.438747,
0.871006,
1.1368449999999999,
0.40341699999999997,
0.965475,
0.43639799999999995,
0.... | [
8050,
8051,
8052,
8053,
8054,
8055,
8056,
8057,
8058,
8059,
8060,
8061,
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8063,
8064,
8065,
8066,
8067,
8068,
8069,
8070,
8071,
8072,
8073,
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8077,
8078,
8079,
8080,
8081,
8082,
8083,
8084,
8085,
8086,
8087,
8088,
8089... | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV cpz SHAPE(1M7) SSII-Mn(2+) Mut. | GCTGTGGAAAGGTATCTAAAGGATCAACAACTCCTAGGACTATGGGGCTGCTCTGGAAAACTCATTTGCACTACTAATGTGCCTTGGAATAATACTTGGAGTAAAAAATTAGGAACAAACCTATCCTTTTGGGATAACATGACATGGATGCAATGGGAGAAAGAGATTGATAACTACACAGAAACTATCTATGAACTTCTAACACGATCTCAGAATCAACAGGAAGTCAATGAGCAAGAATTGTTAGCTCTGGATAAATGGTCAAGCCTGTGGAATTGGTTCGATATAACACAGTGGCTGTGGTATATAAAATTATTTGT... | [
-0.048062999999999995,
-0.160541,
0.008737,
0.051005999999999996,
0.224183,
0.106459,
0.391482,
0.6885009999999999,
0.44215699999999997,
1.009725,
0.303294,
0.16636,
0.083121,
0.006506,
-0.031349,
-0.008091,
1.311732,
0.647212,
0.309218,
0.166564,
0.054271,
0.036362,
0.04... | [
7475,
7476,
7477,
7478,
7479,
7480,
7481,
7482,
7483,
7484,
7485,
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7487,
7488,
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7490,
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7495,
7496,
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7498,
7499,
7500,
7501,
7502,
7503,
7504,
7505,
7506,
7507,
7508,
7509,
7510,
7511,
7512,
7513,
7514... | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV cpz SHAPE(1M7) SSII-Mn(2+) Mut. | CACATTATTTCAATTGTGGAGGAGAATTCTTTTACTGTAATACATCAAACTTATTCAATCAATCCACTATTAACAATATTACACACATTCCGTGCAGAATAAGACAAATTGTAAATCAGTGGCAAGGAGTAGGAAAAGGAATCTTTGCACCTCCTATTAGAGGAACAATTCAATGTAATTCCACAATCACAGGCCTACTCTTAACAAGAGATGGTAAAAATGAGACTGAAACTTTTAGACCTACAGGAGGAGACATGAGAAATAATTGGAGAAGTGAATTATACAAATACAAGGTAGTAAAAATTGAACCCCTAGGATTA... | [
0.38191,
0.037455999999999996,
-0.006879,
0.27585000000000004,
0.137703,
0.518276,
0.563869,
0.069788,
0.45974699999999996,
0.40372399999999997,
0.149281,
0.48011899999999996,
0.6592509999999999,
0.08336099999999999,
0.109954,
0.150509,
0.171098,
0.7676529999999999,
0.541557,
0... | [
6900,
6901,
6902,
6903,
6904,
6905,
6906,
6907,
6908,
6909,
6910,
6911,
6912,
6913,
6914,
6915,
6916,
6917,
6918,
6919,
6920,
6921,
6922,
6923,
6924,
6925,
6926,
6927,
6928,
6929,
6930,
6931,
6932,
6933,
6934,
6935,
6936,
6937,
6938,
6939... | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV cpz SHAPE(1M7) SSII-Mn(2+) Mut. | GACAGTTAAAAATGGAACTTATAGGTTAATTAACTGTAATACCACAGCCATAACCCAGGCTTGTCCAAAAACATCATTTGAACCAATTCCTATTTACTATTGTGCACCAGCTGGATTTGCCCTTTTAAAATGTAATGACCAGAATTTCAAGGGAAAAGGGACATGTAGAAATGTTAGCACAGTGCATTGTACACATGGTATTAAGCCTGTAGTCTCTACCCAATTCCTCTTGAATGGAAGCCTGGCAGAAGGAAACAAGACTGTAGTTAGGGTAAGAAGTAAATCTAATACAGAGACTATCATTGTGCAGCTAGCTACAG... | [
0.533122,
0.344177,
0.291855,
0.27321,
0.247159,
0.420402,
0.49302199999999996,
0.8735339999999999,
1.55909,
1.21201,
0.595183,
0.37491599999999997,
0.773319,
2.829413,
0.44326699999999997,
-0.009927,
0.141931,
0.029630000000000004,
0.591549,
0.7556,
1.7822529999999999,
0.7... | [
6325,
6326,
6327,
6328,
6329,
6330,
6331,
6332,
6333,
6334,
6335,
6336,
6337,
6338,
6339,
6340,
6341,
6342,
6343,
6344,
6345,
6346,
6347,
6348,
6349,
6350,
6351,
6352,
6353,
6354,
6355,
6356,
6357,
6358,
6359,
6360,
6361,
6362,
6363,
6364... | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV cpz SHAPE(1M7) SSII-Mn(2+) Mut. | ATCAATTGATTGACAGAATAAGAGAAAGAGCAGAAGATAGTGGAAATGAAAGTGATGGGGACACAGAGGAGTTGGAAGCAATTCTTATCCCTGAGGATCGTCATGTGCTTGTGGCTATTAGGGGTTATTAGATCTGAAAATAATTTATGGGTAACAGTGTACTATGGAGTACCTGTATGGAAAGAGGCAAAAACAACTCTTTTTTGTGCATCAGACGCTAAAGCACAGATAGCTGAGGCACACAACATATGGGCTTCTCAAGCTTGTGTGCCTACAGATCCTAACCCTGAAGAAATAACGTTAGAAAATGTAACAGAAGA... | [
0.38781499999999997,
0.336414,
0.44215499999999996,
0.542156,
0.929151,
0.554947,
1.075494,
0.930681,
0.602807,
-0.140881,
0.42583099999999996,
1.090312,
0.043375,
0.22186599999999998,
0.889104,
1.414347,
1.416987,
1.442632,
1.731495,
2.047939,
0.38987099999999997,
1.724141... | [
5750,
5751,
5752,
5753,
5754,
5755,
5756,
5757,
5758,
5759,
5760,
5761,
5762,
5763,
5764,
5765,
5766,
5767,
5768,
5769,
5770,
5771,
5772,
5773,
5774,
5775,
5776,
5777,
5778,
5779,
5780,
5781,
5782,
5783,
5784,
5785,
5786,
5787,
5788,
5789... | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV cpz SHAPE(1M7) SSII-Mn(2+) Mut. | TGGACACTAGAATTATTAGATGAACTCAAACAGGAAGCAGTAAGACATTTTCCTAGACAGTGGCTTCATGATTTAGGACAGCACATTTATAACACATATGGAGACACTTGGGCGGGGGTTGAGGCTATCATAAGGATCCTGCAACAATTGCTGTTTATTCATTACAGAATTGGCTGCCAACATAGCAGAATAGGCATTCTGCCACAAGGAAGAAGGAGAAATGGATCCAATAGATCCTAACTTAGAACCCTGGAATCATCCAGGAAGCCAGCCTAAAACCCCCTGTAACAATTGCTATTGTAAAATGTGTTGCTATCACT... | [
0.408973,
0.010150000000000001,
0.135354,
-0.105241,
0.110416,
0.11879,
0.32657,
0.944282,
1.308709,
1.118047,
1.47726,
1.2723659999999999,
1.414304,
1.272482,
1.781096,
0.18473799999999999,
0.767272,
0.700651,
0.692722,
0.7846500000000001,
0.5645789999999999,
0.525793,
0... | [
5175,
5176,
5177,
5178,
5179,
5180,
5181,
5182,
5183,
5184,
5185,
5186,
5187,
5188,
5189,
5190,
5191,
5192,
5193,
5194,
5195,
5196,
5197,
5198,
5199,
5200,
5201,
5202,
5203,
5204,
5205,
5206,
5207,
5208,
5209,
5210,
5211,
5212,
5213,
5214... | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV cpz SHAPE(1M7) SSII-Mn(2+) Mut. | GGGACTATGGAAAACAGGTGGAAGGTAATGATTGTCTGGCAGATAGACAGGATGAGAGTTAAAGCATGGAACAGTTTGGTAAAACATCACATGTATGTGTCTAAAAAGGCACGAGGTTGGTTTTACAGACATCATTATGAAAGTGAGAATCCAAAAGTTAGTTCAGAAATTCACATTCCAGTAGGAGATGCCAAATTAGTAATAGTAACCTATTGGGGACTCATGCCAGGAGAAAGAGACTGGCATTTAGGACATGGGGTCTCTATAGAATGGAGACAGAAAAGATATAGCACACAAATAGATCCTGAATTGGCAGACCA... | [
0.032508999999999996,
-0.06554499999999999,
-0.030477999999999998,
-0.039062,
-0.064995,
0.095775,
0.247336,
0.51395,
0.611348,
0.340341,
0.13780299999999998,
0.40639000000000003,
0.271454,
0.22258399999999998,
0.19677699999999998,
0.171544,
0.034845,
0.167258,
0.055854,
0.1518... | [
4600,
4601,
4602,
4603,
4604,
4605,
4606,
4607,
4608,
4609,
4610,
4611,
4612,
4613,
4614,
4615,
4616,
4617,
4618,
4619,
4620,
4621,
4622,
4623,
4624,
4625,
4626,
4627,
4628,
4629,
4630,
4631,
4632,
4633,
4634,
4635,
4636,
4637,
4638,
4639... | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV cpz SHAPE(1M7) SSII-Mn(2+) Mut. | ACATGTAGCCAGTGGATACATAGAGGCAGAAGTCATACCTGCTGAAACAGGGCAAGAGACAGCTTATTTTGTGCTGAAATTAGCAGGAAGATGGCCAGTAAAGGTTATACACACTGATAATGGCAGCAACTTTACTAGTGCTGCTGTCAAGGCTGCATGTTGGTGGGCAAATATCCAACAGGAATTTGGAATTCCCTACAATCCTCAGAGTCAAGGAGTAGTAGAATCAATGAACAAAGAGTTAAAGAAAATCATAGGGCAGGTAAGAGATCAAGCAGAACATTTAAAGACAGCAGTGCAAATGGCAGTCTTCATTCACA... | [
0.34896299999999997,
0.14569000000000001,
0.16633599999999998,
0.149883,
0.15329199999999998,
-0.08906599999999999,
0.197345,
0.155413,
0.030393999999999997,
0.501436,
0.337744,
0.418338,
0.018056,
0.131427,
0.33527,
0.30625399999999997,
0.31382499999999997,
0.218028,
0.651069,
... | [
4025,
4026,
4027,
4028,
4029,
4030,
4031,
4032,
4033,
4034,
4035,
4036,
4037,
4038,
4039,
4040,
4041,
4042,
4043,
4044,
4045,
4046,
4047,
4048,
4049,
4050,
4051,
4052,
4053,
4054,
4055,
4056,
4057,
4058,
4059,
4060,
4061,
4062,
4063,
4064... | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV cpz SHAPE(1M7) SSII-Mn(2+) Mut. | GCAAATAGAGAAACCAAATTAGGAAAAGCAGGATATGTAACTGATAGAGGGAGACAAAAGATTATCTCCCTAACAGAAACAACTAATCAAAGAGCAGAACTGCAAGCTATATACCTAGCCCTACAGGATTCAGAAGTAGAGGTAAACATAGTTACTGACTCACAATATGCATTAGGGATCATTCAATCACAGCCTGACATTAGTGAATCAGACATAGTAAATCAGATAATAGAGCAGCTAGTGAAAAAGGAAAAGATTTATCTTTCATGGGTACCAGCACACAAAGGGATTGGAGGAAATGAACAAATAGACAAATTAGT... | [
0.012095999999999999,
0.066076,
0.187752,
1.122642,
0.5668059999999999,
1.639854,
0.926338,
1.741539,
0.12351799999999999,
1.036657,
0.200817,
0.446984,
-0.002147,
0.180948,
0.258324,
0.108971,
0.21337599999999998,
1.247352,
0.844959,
0.675698,
0.795806,
0.02101,
0.500445... | [
3450,
3451,
3452,
3453,
3454,
3455,
3456,
3457,
3458,
3459,
3460,
3461,
3462,
3463,
3464,
3465,
3466,
3467,
3468,
3469,
3470,
3471,
3472,
3473,
3474,
3475,
3476,
3477,
3478,
3479,
3480,
3481,
3482,
3483,
3484,
3485,
3486,
3487,
3488,
3489... | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV cpz SHAPE(1M7) SSII-Mn(2+) Mut. | GTCTCTCTTGTTAGACCAGATCTGAGCCTGGGAGCTCTCTGGCTAATAGGAGAACCCACTGCTTAAGCCTCAATAAAGCTTGCCTGAGTAACTTGAGCAGTGTGTGCCCATCCAATTTGTGACTCTGGTATCTAGAGATCCCTCAGATATTAAGTGTCTGTGCGGAAAATCTCTAGCAGTGGCGCCCGAACAGGGACTTGAAAACGAAAGTGTAACCGGAGAAGTTCTCTCGACGCAGGACTCGACTTGCTGAGTGCGCACCAGCAAGGGGCGAGGGGCCGGCGACTGGTGAGTACGCCTAATTTTTGACTAGCGAAAGC... | [
null,
null,
0.342985,
0.42939299999999997,
0.517524,
-0.0052239999999999995,
0.318936,
0.286267,
0.426909,
0.546432,
-0.121319,
0.373415,
0.061467999999999995,
0.217447,
1.238682,
0.180275,
0.281209,
-0.029870999999999998,
-0.012695,
1.184412,
0.9315479999999999,
3.907218,
... | [
0,
1,
2,
3,
4,
5,
6,
7,
8,
9,
10,
11,
12,
13,
14,
15,
16,
17,
18,
19,
20,
21,
22,
23,
24,
25,
26,
27,
28,
29,
30,
31,
32,
33,
34,
35,
36,
37,
38,
39,
40,
41,
42,
43,
44,
45,
46,
47,
48,
49,
50,
51,
52,
53,
54... | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV cpz SHAPE(1M7) SSII-Mn(2+) Mut. | CCCTAGCAGTCCTCTGGTGCGTACATCAAAGAATTAGAGTAAAAGACACAAAAGAGGCTTTAGACAAACTAGAAGAAGTGCAGCAAAAAAGCAAAGTGAAAGTAAAACAGGAAGCCGCGGCGGCAGACCCCAGCGGCGGCGAGAGCAGAAACTTCCCGATAGTAACAAATGCTCAGGGACAAATGGTCCATCAGTCGCTCTCACCCAGAACTTTAAATGCATGGGTAAAAGTAGTAGAAGAAAAGGCATTTAGCCCAGAAGTCATACCCATGTTTATGGCTCTATCAGAAGGAGCCACCCCTCAGGATTTAAACACCATG... | [
0.10216199999999999,
0.20601699999999998,
0.188431,
0.361653,
0.762689,
0.437453,
0.487562,
0.392968,
0.894578,
0.254353,
-0.10091299999999999,
-0.10138499999999999,
0.020697999999999998,
0.082788,
0.222457,
0.058166999999999996,
0.008043999999999999,
0.098545,
0.210899,
0.3490... | [
575,
576,
577,
578,
579,
580,
581,
582,
583,
584,
585,
586,
587,
588,
589,
590,
591,
592,
593,
594,
595,
596,
597,
598,
599,
600,
601,
602,
603,
604,
605,
606,
607,
608,
609,
610,
611,
612,
613,
614,
615,
616,
617,
618,
619,
6... | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV cpz SHAPE(1M7) SSII-Mn(2+) Mut. | TCAATGACATACAGAAATTAGTAGGAAAGTTAAATTGGGCAAGTCAAATATATCCAGGAATTAAGGTAAAACAATTGTGTAAGCTTATTAGAGGAACAAAAGCTTTAACAGAGGTAGTTACCCTCACACAGGAAGCAGAATTAGAGTTAGCAGAAAACAGGGAGATATTAAGAGACCCTGTACATGGGGCCTACTATGACCCCTCAAAAGAATTGATAGCAGAAATACAGAAACAAGGTCAAGGCCAATGGACTTATCAGATTTATCAGGAACAGCATAAAAATCTGAAAACAGGAAAATATGCAAAAATGAGAGCTGCC... | [
-0.10312199999999999,
-0.105958,
0.15659,
1.2761500000000001,
1.011405,
0.773841,
0.13683,
0.19478199999999998,
0.5205919999999999,
1.626095,
0.034408,
0.836707,
0.370189,
1.303371,
0.206526,
1.431655,
1.083073,
0.845634,
0.980784,
0.811935,
1.3026389999999999,
0.177833,
... | [
2875,
2876,
2877,
2878,
2879,
2880,
2881,
2882,
2883,
2884,
2885,
2886,
2887,
2888,
2889,
2890,
2891,
2892,
2893,
2894,
2895,
2896,
2897,
2898,
2899,
2900,
2901,
2902,
2903,
2904,
2905,
2906,
2907,
2908,
2909,
2910,
2911,
2912,
2913,
2914... | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV cpz SHAPE(1M7) SSII-Mn(2+) Mut. | TATTAAGAAAAAGGATAGCACAAAATGGAGAAAATTAGTAGACTTCAGAGAATTAAATAAAAGAACCCAAGATTTTTGGGAAGTCCAGCTAGGAATACCACACCCTGCGGGACTGAAAAAGAAAAAATCAGTAACAGTGCTGGACGTAGGGGATGCTTATTTTTCATGCCCCCTAGATGAAGAGTTTAGAAAATACACTGCCTTCACCATACCTAGTGTAAATAATGAGACACCAGGAATAAGGTACCAGTACAATGTACTCCCGCAGGGATGGAAAGGATCACCAGCTATTTTTCAAAGCAGTATGACTAAGATTCTGG... | [
0.137122,
0.002936,
1.214141,
0.951081,
3.55736,
2.223086,
0.9253509999999999,
0.669594,
0.595389,
1.045903,
1.576811,
-0.049275,
0.42912000000000006,
1.789205,
0.987706,
0.28580099999999997,
0.433714,
0.190078,
1.320316,
0.194929,
1.371964,
1.083954,
1.143772,
0.194100... | [
2300,
2301,
2302,
2303,
2304,
2305,
2306,
2307,
2308,
2309,
2310,
2311,
2312,
2313,
2314,
2315,
2316,
2317,
2318,
2319,
2320,
2321,
2322,
2323,
2324,
2325,
2326,
2327,
2328,
2329,
2330,
2331,
2332,
2333,
2334,
2335,
2336,
2337,
2338,
2339... | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV cpz SHAPE(1M7) SSII-Mn(2+) Mut. | ATAGTAAGAATGTATAGCCCTGTCAGTATTCTAGATATAAAGCAAGGACCAAAAGAACCATTTAGAGATTATGTGGACAGATTTTACAAAACTCTAAGAGCTGAACAAGCAACCCAAGATGTAAAAAATTGGATGACAGAGACCTTGCTAGTGCAAAATGCCAACCCAGATTGTAAGCAAATTTTAAGAGCTCTGGGTCCAGGGGCAACCTTAGAAGAAATGATGACAGCCTGCCAGGGAGTAGGGGGCCCCTCTCATAAAGCCAGAGTATTGGCAGAAGCAATGAGTCAGGCAAACACCACTGTTATGATGCAAAGAGG... | [
0.9868669999999999,
0.890542,
0.69515,
2.113437,
0.39433,
1.055335,
1.383348,
1.955609,
1.296049,
1.177906,
1.601623,
1.072829,
0.959344,
1.527729,
0.433268,
0.618618,
0.021906,
0.063576,
-0.106892,
0.038076,
0.079411,
0.8616800000000001,
0.457401,
0.10823,
0.698786,
... | [
1150,
1151,
1152,
1153,
1154,
1155,
1156,
1157,
1158,
1159,
1160,
1161,
1162,
1163,
1164,
1165,
1166,
1167,
1168,
1169,
1170,
1171,
1172,
1173,
1174,
1175,
1176,
1177,
1178,
1179,
1180,
1181,
1182,
1183,
1184,
1185,
1186,
1187,
1188,
1189... | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV mac SHAPE(1M7) SSII-Mn(2+) Mut. | AGTCGCTCTGCGGAGAGGCTGGCAGATTGAGCCCTGGGAGGTTCTCTCCAGCACTAGCAGGTAGAGCCTGGGTGTTCCCTGCTAGACTCTCACCAGCACTTGGCCGGTGCTGGGCAGAGTGACTCCACGCTTGCTTGCTTAAAGCCCTCTTCAATAAAGCTGCCATTTTAGAAGTAAGCTAGTGTGTGTTCCCATCTCTCCTAGCCGCCGCCTGGTCAACTCGGTACTCAATAATAAGAAGACCCTGGTCTGTTAGGACCCTTTCTGCTTTGGGAAACCGAAGCAGGAAAATCCCTAGCAGATTGGCGCCTGAACAGGGA... | [
null,
null,
-3.6568300000000002,
null,
0.200741,
null,
-0.691149,
-0.5870259999999999,
-1.284225,
null,
-1.70361,
null,
-0.373749,
-0.6068100000000001,
-0.36307799999999996,
-0.400673,
-0.47296299999999997,
-0.037377,
-0.782266,
-0.656196,
-0.339033,
0.006741,
-0.688291,
... | [
0,
1,
2,
3,
4,
5,
6,
7,
8,
9,
10,
11,
12,
13,
14,
15,
16,
17,
18,
19,
20,
21,
22,
23,
24,
25,
26,
27,
28,
29,
30,
31,
32,
33,
34,
35,
36,
37,
38,
39,
40,
41,
42,
43,
44,
45,
46,
47,
48,
49,
50,
51,
52,
53,
54... | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV mac SHAPE(1M7) SSII-Mn(2+) Mut. | TTGCTAACAGCTCTGGGGATGTCTCTAAATTTTCCCATAGCTAAAGTAGAGCCTGTAAAAGTCGCCTTAAAGCCAGGAAAGGATGGACCAAAATTGAAGCAGTGGCCATTATCAAAAGAAAAGATAGTTGCATTAAGAGAAATCTGTGAAAAGATGGAAAAGGATGGTCAGTTGGAGGAAGCTCCCCCGACCAATCCATACAACACCCCCACATTTGCTATAAAGAAAAAGGATAAGAACAAATGGAGAATGCTGATAGATTTTAGGGAACTAAATAGGGTCACTCAGGACTTTACGGAAGTCCAATTAGGAATACCACA... | [
0.45134599999999997,
2.79604,
0.265943,
-0.067023,
1.209238,
0.741458,
0.729514,
0.913121,
1.207267,
-0.017356,
null,
0.296925,
0.687225,
1.819651,
-0.475786,
0.068864,
-0.47287399999999996,
-0.011717,
1.397078,
0.485147,
0.363664,
-0.08266599999999999,
-0.044660000000000... | [
2300,
2301,
2302,
2303,
2304,
2305,
2306,
2307,
2308,
2309,
2310,
2311,
2312,
2313,
2314,
2315,
2316,
2317,
2318,
2319,
2320,
2321,
2322,
2323,
2324,
2325,
2326,
2327,
2328,
2329,
2330,
2331,
2332,
2333,
2334,
2335,
2336,
2337,
2338,
2339... | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV mac SHAPE(1M7) SSII-Mn(2+) Mut. | AAATAGGAAAGGAAGCAATAGTGATCTGGGGACAGGTCCCAAAATTCCACTTACCAGTTGAGAAGGATGTATGGGAACAGTGGTGGACAGACTATTGGCAGGTAACCTGGATACCGGAATGGGATTTTATCTCAACACCACCGCTAGTAAGATTAGTCTTCAATCTAGTGAAGGACCCTATAGAGGGAGAAGAAACCTATTATACAGATGGATCATGTAATAAACAGTCAAAAGAAGGGAAAGCAGGATATATCACAGATAGGGGCAAAGACAAAGTAAAAGTGTTAGAACAGACTACTAATCAACAAGCAGAATTGGAA... | [
1.820026,
0.876934,
0.71687,
3.857705,
0.057501,
0.275829,
0.46307099999999995,
0.9500259999999999,
1.350207,
0.605038,
0.196617,
1.370349,
0.470825,
0.27724499999999996,
0.000722,
0.599896,
0.5822700000000001,
1.038044,
0.8900929999999999,
0.193163,
0.567209,
0.308041,
0... | [
3450,
3451,
3452,
3453,
3454,
3455,
3456,
3457,
3458,
3459,
3460,
3461,
3462,
3463,
3464,
3465,
3466,
3467,
3468,
3469,
3470,
3471,
3472,
3473,
3474,
3475,
3476,
3477,
3478,
3479,
3480,
3481,
3482,
3483,
3484,
3485,
3486,
3487,
3488,
3489... | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV mac SHAPE(1M7) SSII-Mn(2+) Mut. | GAGCCAGCACAAGAAGAACATGATAAATACCATAGTAATGTAAAAGAATTGGTATTCAAATTTGGATTACCCAGAATAGTGGCCAGACAGATAGTAGACACCTGTGATAAATGTCATCAGAAAGGAGAGGCTATACATGGGCAGGCAAATTCAGATCTAGGGACTTGGCAAATGGATTGTACCCATCTAGAGGGAAAAATAATCATAGTTGCAGTACATGTAGCTAGTGGATTCATAGAAGCAGAGGTAATTCCACAAGAGACAGGAAGACAGACAGCACTATTTCTGTTAAAATTGGCAGGCAGATGGCCTATTACACA... | [
0.618822,
0.048143,
-0.013486,
0.471149,
0.524006,
0.389966,
-0.167875,
0.711013,
0.134704,
-0.096051,
0.26120099999999996,
1.226996,
0.418303,
0.314394,
-4.141454,
1.194596,
-0.212855,
0.106153,
2.674076,
1.249458,
1.190437,
4.295773,
0.7792629999999999,
2.661879,
1.... | [
4025,
4026,
4027,
4028,
4029,
4030,
4031,
4032,
4033,
4034,
4035,
4036,
4037,
4038,
4039,
4040,
4041,
4042,
4043,
4044,
4045,
4046,
4047,
4048,
4049,
4050,
4051,
4052,
4053,
4054,
4055,
4056,
4057,
4058,
4059,
4060,
4061,
4062,
4063,
4064... | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV mac SHAPE(1M7) SSII-Mn(2+) Mut. | AGAAAGATTAATTAACATGATCACTACAGAACAAGAGATACAATTTCAACAATCAAAAAACTCAAAATTTAAAAATTTTCGGGTCTATTACAGAGAAGGCAGAGATCAACTGTGGAAGGGACCCGGTGAGCTATTGTGGAAAGGGGAAGGAGCAGTCATCTTAAAGGTAGGGACAGACATTAAGGTAGTACCCAGAAGAAAGGCTAAAATTATCAAAGATTATGGAGGAGGAAAAGAGGTGGATAGCAGTTCCCACATGGAGGATACCGGAGAGGCTAGAGAGGTGGCATAGCCTCATAAAATATCTGAAATATAAAACT... | [
0.333661,
2.424157,
2.656588,
1.305907,
0.016250999999999998,
1.5197289999999999,
1.969609,
-0.042122,
0.971947,
1.744174,
1.2588489999999999,
1.941352,
0.9021849999999999,
1.539242,
0.08835599999999999,
0.20208199999999998,
0.418409,
0.7174100000000001,
0.885138,
0.244474,
0... | [
4600,
4601,
4602,
4603,
4604,
4605,
4606,
4607,
4608,
4609,
4610,
4611,
4612,
4613,
4614,
4615,
4616,
4617,
4618,
4619,
4620,
4621,
4622,
4623,
4624,
4625,
4626,
4627,
4628,
4629,
4630,
4631,
4632,
4633,
4634,
4635,
4636,
4637,
4638,
4639... | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV mac SHAPE(1M7) SSII-Mn(2+) Mut. | GCGGGAGAAGTGAGAAGGGCCATCAGGGGAGAACAACTGCTGTCTTGCTGCAGGTTCCCGAGAGCTCATAAGTACCAGGTACCAAGCCTACAGTACTTAGCACTGAAAGTAGTAAGCGATGTCAGATCCCAGGGAGAGAATCCCACCTGGAAACAGTGGAGAAGAGACAATAGGAGAGGCCTTCGAATGGCTAAACAGAACAGTAGAGGAGATAAACAGAGAGGCGGTAAACCACCTACCAAGGGAGCTAATTTTCCAGGTTTGGCAAAGGTCTTGGGAATACTGGCATGATGAACAAGGGATGTCACCAAGCTATGTAA... | [
null,
0.168105,
0.06702000000000001,
-0.033694999999999996,
0.241723,
0.9370459999999999,
0.09759799999999999,
-0.018434,
0.225769,
0.258469,
0.129253,
null,
0.598192,
0.870006,
0.540512,
1.355797,
0.104457,
0.024508,
0.025741999999999998,
0.47715599999999997,
-0.051858999999... | [
5175,
5176,
5177,
5178,
5179,
5180,
5181,
5182,
5183,
5184,
5185,
5186,
5187,
5188,
5189,
5190,
5191,
5192,
5193,
5194,
5195,
5196,
5197,
5198,
5199,
5200,
5201,
5202,
5203,
5204,
5205,
5206,
5207,
5208,
5209,
5210,
5211,
5212,
5213,
5214... | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV mac SHAPE(1M7) SSII-Mn(2+) Mut. | TAACTGCACTTGGTAATCATATCTATAATAGACATGGAGACACCCTTGAGGGAGCAGGAGAACTCATTAGAATCCTCCAACGAGCGCTCTTCATGCATTTCAGAGGCGGATGCATCCACTCCAGAATCGGCCAACCTGGGGGAGGAAATCCTCTCTCAGCTATACCGCCCTCTAGAAGCATGCTATAACACATGCTATTGTAAAAAGTGTTGCTACCATTGCCAGTTTTGTTTTCTTAAAAAAGGCTTGGGGATATGTTATGAGCAATCACGAAAGAGAAGAAGAACTCCGAAAAAGGCTAAGGCTAATACATCTTCTGC... | [
0.669605,
-0.050383,
0.5958829999999999,
0.7088800000000001,
0.17902099999999999,
-0.044885999999999995,
-0.129496,
0.252153,
0.395547,
0.729136,
0.504217,
0.483131,
null,
0.45535899999999996,
0.992792,
1.610242,
1.304325,
1.8371659999999999,
1.065626,
0.563982,
0.47823000000... | [
5750,
5751,
5752,
5753,
5754,
5755,
5756,
5757,
5758,
5759,
5760,
5761,
5762,
5763,
5764,
5765,
5766,
5767,
5768,
5769,
5770,
5771,
5772,
5773,
5774,
5775,
5776,
5777,
5778,
5779,
5780,
5781,
5782,
5783,
5784,
5785,
5786,
5787,
5788,
5789... | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV mac SHAPE(1M7) SSII-Mn(2+) Mut. | ACAGTCACAGAACAGGCAATAGAGGATGTATGGCAACTCTTTGAGACCTCAATAAAGCCTTGTGTAAAATTATCCCCATTATGCATTACTATGAGATGCAATAAAAGTGAGACAGATAGATGGGGATTGACAAAATCAATAACAACAACAGCATCAACAACATCAACGACAGCATCAGCAAAAGTAGACATGGTCAATGAGACTAGTTCTTGTATAGCCCAGGATAATTGCACAGGCTTGGAACAAGAGCAAATGATAAGCTGTAAATTCAACATGACAGGGTTAAAAAGAGACAAGAAAAAAGAGTACAATGAAACTTG... | [
0.373444,
0.7704259999999999,
0.351919,
0.6800149999999999,
0.263675,
0.33425699999999997,
0.38381499999999996,
0.336983,
0.304759,
0.960174,
1.519292,
0.589671,
-0.225787,
0.211056,
0.06633499999999999,
0.066897,
-0.014664,
0.23988199999999998,
1.139381,
0.8831869999999999,
... | [
6325,
6326,
6327,
6328,
6329,
6330,
6331,
6332,
6333,
6334,
6335,
6336,
6337,
6338,
6339,
6340,
6341,
6342,
6343,
6344,
6345,
6346,
6347,
6348,
6349,
6350,
6351,
6352,
6353,
6354,
6355,
6356,
6357,
6358,
6359,
6360,
6361,
6362,
6363,
6364... | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV mac SHAPE(1M7) SSII-Mn(2+) Mut. | TACTTGGTTTGGCTTTAATGGAACTAGAGCAGAAAATAGAACTTATATTTACTGGCATGGTAGGGATAATAGGACTATAATTAGTTTAAATAAGTATTATAATCTAACAATGAAATGTAGAAGACCAGGAAATAAGACAGTTTTACCAGTCACCATTATGTCTGGATTGGTTTTCCACTCACAACCAATCAATGATAGGCCAAAGCAGGCATGGTGTTGGTTTGGAGGAAAATGGAAGGATGCAATAAAAGAGGTGAAGCAGACCATTGTCAAACATCCCAGGTATACTGGAACTAACAATACTGATAAAATCAATTTGA... | [
1.956184,
0.5169079999999999,
-0.035503,
0.251472,
0.330019,
0.41106699999999996,
0.144173,
0.19414099999999998,
0.20460899999999999,
0.24999000000000002,
0.419328,
0.15731399999999998,
0.073914,
0.12925799999999998,
0.962892,
1.122846,
2.205724,
0.7655700000000001,
1.238881,
0... | [
6900,
6901,
6902,
6903,
6904,
6905,
6906,
6907,
6908,
6909,
6910,
6911,
6912,
6913,
6914,
6915,
6916,
6917,
6918,
6919,
6920,
6921,
6922,
6923,
6924,
6925,
6926,
6927,
6928,
6929,
6930,
6931,
6932,
6933,
6934,
6935,
6936,
6937,
6938,
6939... | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV mac SHAPE(1M7) SSII-Mn(2+) Mut. | CCAGTCTCATAGCAAACATAGATTGGATTGATGGAAACCAAACTAATATCACCATGAGTGCAGAGGTGGCAGAACTGTATCGATTGGAATTGGGAGATTATAAATTAGTAGAGATCACTCCAATTGGCTTGGCCCCCACAGATGTGAAGAGGTACACTACTGGTGGCACCTCAAGAAATAAAAGAGGGGTCTTTGTGCTAGGGTTCTTGGGTTTTCTCGCAACGGCAGGTTCTGCAATGGGCGCGGCGTCGTTGACGCTGACCGCTCAGTCCCGAACTTTATTGGCTGGGATAGTGCAGCAACAGCAACAGCTGTTGGAC... | [
-0.073638,
-0.285321,
0.302517,
0.230448,
-0.10678599999999999,
-0.263768,
0.15268,
0.48555299999999996,
0.331304,
1.433412,
1.28067,
0.39318000000000003,
0.6304449999999999,
1.041906,
0.376399,
1.375335,
0.8451369999999999,
1.487055,
1.17647,
0.991641,
1.005358,
0.535254,
... | [
7475,
7476,
7477,
7478,
7479,
7480,
7481,
7482,
7483,
7484,
7485,
7486,
7487,
7488,
7489,
7490,
7491,
7492,
7493,
7494,
7495,
7496,
7497,
7498,
7499,
7500,
7501,
7502,
7503,
7504,
7505,
7506,
7507,
7508,
7509,
7510,
7511,
7512,
7513,
7514... | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV mac SHAPE(1M7) SSII-Mn(2+) Mut. | GAGGAGGCACAAATTCAACAAGAGAAGAACATGTATGAATTACAAAAGTTGAATAGCTGGGATGTGTTTGGCAATTGGTTTGACCTTGCTTCTTGGATAAAGTATATACAATATGGAGTTTATATAGTTGTAGGAGTAATACTGTTAAGAATAGTGATCTATATAGTACAAATGCTAGCTAAGTTAAGGCAGGGGTATAGGCCAGTGTTCTCTTCCCCACCCTCTTATTTCCAGCAGACCCATATCCAACAGGACCCGGCACTGCCAACCAGAGAAGGCAAAGAAAGAGACGGTGGAGAAGGCGGTGGCAACAGCTCCTG... | [
0.311233,
0.8307129999999999,
0.227711,
0.14163699999999999,
0.099863,
0.100732,
0.09078499999999999,
0.100168,
0.007422,
1.652225,
0.156171,
1.411283,
0.5932700000000001,
0.5136809999999999,
0.774794,
0.102325,
0.351458,
0.34572,
0.095132,
0.883926,
0.111122,
0.673648,
0... | [
8050,
8051,
8052,
8053,
8054,
8055,
8056,
8057,
8058,
8059,
8060,
8061,
8062,
8063,
8064,
8065,
8066,
8067,
8068,
8069,
8070,
8071,
8072,
8073,
8074,
8075,
8076,
8077,
8078,
8079,
8080,
8081,
8082,
8083,
8084,
8085,
8086,
8087,
8088,
8089... | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV mac SHAPE(1M7) SSII-Mn(2+) Mut. | CGCGTGGGGAGACTTATGGGAGACTCTTAGGAGAGGTGGAAGATGGATACTCGCAATCCCCAGGAGGATTAGACAAGGGCTTGAGCTCACTCTCTTGTGAGGGACAGAAATACAATCAGGGACAGTATATGAATACTCCATGGAGAAACCCAGCTGAAGAGAGAGAAAAATTAGCATACAGAAAACAAAATATGGATGATATAGATGAGTAAGATGATGACTTGGTAGGGGTATCAGTGAGGCCAAAAGTTCCCCTAAGAACAATGAGTTACAAATTGGCAATAGACATGTCTCATTTTATAAAAGAAAAGGGGGGACTG... | [
0.45405799999999996,
0.09543499999999999,
0.22822,
0.45392000000000005,
0.40712899999999996,
0.068382,
0.058128,
0.24886000000000003,
0.08325099999999999,
0.942426,
0.368199,
0.163869,
0.4723,
1.521052,
1.439732,
1.264756,
0.529122,
0.47475000000000006,
0.23571799999999998,
0.2... | [
8625,
8626,
8627,
8628,
8629,
8630,
8631,
8632,
8633,
8634,
8635,
8636,
8637,
8638,
8639,
8640,
8641,
8642,
8643,
8644,
8645,
8646,
8647,
8648,
8649,
8650,
8651,
8652,
8653,
8654,
8655,
8656,
8657,
8658,
8659,
8660,
8661,
8662,
8663,
8664... | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV mac SHAPE(1M7) SSII-Mn(2+) Mut. | TTTGATCCAACTCTGGCCTACACTTATGAGGCATATGTTAGATACCCAGAAGAGTTTGGAAGCAAGTCAGGCCTGTCAGAGGAAGAGGTTAGAAGAAGGCTAACCGCAAGAGGCCTTCTTAACATGGCTGACAAGAAGGAAACTCGCTGAAACAGCAGGGACTTTCCACAAGGGGATGTTACGGGGAGGTACTGGGGAGGAGCCGGTCGGGAACGCCCACTTTCTTGATGTATAAATATCACTGCATTTCGCTCTGTATTCAGTCGCTCTGCGGAGAGGCTGGCAGATTGAGCCCTGGGAGGTTCTCTCCAGCACTAGCA... | [
-0.004181,
0.8679359999999999,
1.101945,
1.007159,
1.028349,
0.027537,
0.13960899999999998,
0.056208999999999995,
0.085575,
0.461078,
0.270218,
0.13787000000000002,
0.809326,
1.2481659999999999,
0.8543109999999999,
0.007228,
-0.0033169999999999996,
-0.08318099999999999,
0.6446109... | [
9200,
9201,
9202,
9203,
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9205,
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9210,
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9229,
9230,
9231,
9232,
9233,
9234,
9235,
9236,
9237,
9238,
9239... | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV mac SHAPE(1M7) SSII-Mn(2+) Mut. | AAAGAGGGACACTCTGCAAGGCAATGCAGAGCCCCAAGAAGACAGGGATGCTGGAAATGTGGAAAAATGGACCATGTTATGGCCAAATGCCCAGACAGACAGGCGGGTTTTTTAGGCCTTGGTCCATGGGGAAAGAAGCCCCGCAATTTCCCCATGGCTCAAGTGCATCAGGGGCTGATGCCAACTGCTCCCCCAGAGGACCCAGCTGTGGATCTGCTAAAGAACTACATGCAGTTGGGCAAGCAGCAGAGAGAAAAGCAGAGAGAAAGCAGAGAGAAGCCTTACAAGGAGGTGACAGAGGATTTGCTGCACCTCAATTC... | [
0.360637,
0.8164049999999999,
1.172888,
1.5276509999999999,
0.9784300000000001,
0.043754999999999995,
0.196436,
0.143776,
-0.032591999999999996,
0.45839,
0.199183,
0.031764,
0.043086,
0.12116099999999999,
0.0013009999999999999,
0.008213999999999999,
0.286304,
0.539231,
0.859686,
... | [
1725,
1726,
1727,
1728,
1729,
1730,
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1752,
1753,
1754,
1755,
1756,
1757,
1758,
1759,
1760,
1761,
1762,
1763,
1764... | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV mac SHAPE(1M7) SSII-Mn(2+) Mut. | TTATAAACGAGGAGGCTGCAGATTGGGACTTGCAGCACCCACAACCAGCTCCACAACAAGGACAACTTAGGGAGCCGTCAGGATCAGATATTGCAGGAACAACTAGTTCAGTAGATGAACAAATCCAGTGGATGTACAGACAACAGAACCCCATACCAGTAGGCAACATTTACAGGAGATGGATCCAACTGGGGTTGCAAAAATGTGTCAGAATGTATAACCCAACAAACATTCTAGATGTAAAACAAGGGCCAAAAGAGCCATTTCAGAGCTATGTAGACAGGTTCTACAAAAGTTTAAGAGCAGAACAGACAGATGCA... | [
-0.148894,
0.466756,
2.191029,
2.95425,
0.653562,
0.921439,
0.44183000000000006,
0.454426,
0.503169,
0.822685,
0.464313,
0.342651,
0.610242,
0.34496099999999996,
0.03291,
0.027965,
0.142943,
0.018258999999999997,
-0.049631999999999996,
0.588564,
0.270907,
0.9464429999999999... | [
1150,
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1152,
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1177,
1178,
1179,
1180,
1181,
1182,
1183,
1184,
1185,
1186,
1187,
1188,
1189... | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV mac SHAPE(1M7) SSII-Mn(2+) Mut. | TGAATTAGAAAAAATTAGGCTACGACCCAACGGAAAGAAAAAGTACATGTTGAAGCATGTAGTATGGGCAGCAAATGAATTAGATAGATTTGGATTAGCAGAAAGCCTGTTGGAGAACAAAGAAGGATGTCAAAAAATACTTTCGGTCTTAGCTCCATTAGTGCCAACAGGCTCAGAAAATTTAAAAAGCCTTTATAATACTGTCTGCGTCATCTGGTGCATTCACGCAGAAGAGAAAGTGAAACACACTGAGGAAGCAAAACAGATAGTGCAGAGACACCTAGTGGTGGAAACAGGAACAACAGAAACTATGCCAAAAA... | [
1.345113,
0.7755569999999999,
0.9844649999999999,
0.8055089999999999,
0.468524,
3.013307,
1.5224039999999999,
0.27308899999999997,
0.31871099999999997,
0.748404,
0.879242,
1.868658,
0.081926,
0.45274499999999995,
0.13194899999999998,
0.934862,
0.23960399999999998,
0.106003,
-0.02... | [
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607,
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609,
610,
611,
612,
613,
614,
615,
616,
617,
618,
619,
6... | viral_gRNA | Lavender,2015 |
Lavender,2015 SIV mac SHAPE(1M7) SSII-Mn(2+) Mut. | CCAGTATATGGATGACATCTTAATAGCTAGTGACAGGACAGACCTGGAACATGACAGGGTAGTTTTACAGTCAAAGGAACTCTTGAATAGCATAGGGTTTTCTACCCCAGAAGAGAAATTCCAAAAAGATCCCCCATTTCAATGGATGGGGTACGAATTGTGGCCAACAAAATGGAAGTTGCAAAAGATAGAGTTGCCACAAAGAGAGACCTGGACAGTGAATGATATACAGAAGTTAGTAGGAGTATTAAATTGGGCAGCTCAAATTTATCCAGGTATAAAAACCAAACATCTCTGTAGGTTAATTAGAGGAAAAATGA... | [
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0.46480699999999997,
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0.21412799999999999,
1.359234,
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0.356568,
0.15039000000000002,
0.03334,
0.924858,
3.094021,
2.138258,
1.521772,
... | [
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2902,
2903,
2904,
2905,
2906,
2907,
2908,
2909,
2910,
2911,
2912,
2913,
2914... | viral_gRNA | Lavender,2015 |
Leppek, 2021, Nluc mRNA DMS in vitro | GGGACATTTGCTTCTGACACAACTGTGTTCACTAGCAACCTCAAACAGACACCATGTGGCTAGTAAGCCTCGCCATCGTAACAGCCTGCGCCGGCGCCATGGCCGTCTACCCATACGATGTACCAGACTACGCCGGCTACCCCTACGACGTCCCAGACTACGCAGGCTCCTACCCATACGACGTCCCAGACTACGCAGGATCAGGCGTCTTCACACTCGAAGACTTCGTTGGAGACTGGCGACAGACAGCCGGATACAACCTAGACCAAGTCCTAGAGCAAGGAGGAGTATCCAGTTTGTTCCAAAACCTCGGAGTCTCC... | [
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0.027,
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0.062,
0.194,
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... | [
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39,
40,
41,
42,
43,
44,
45,
46,
47,
48,
49,
50,
51,
52,
53,
54... | mRNA | Leppek, 2021, Nluc mRNA DMS in vitro |
Leppek, 2021, Nluc mRNA DMS in vitro | AAGAAGATCACCGTAACAGGAACCCTATGGAACGGCAACAAGATTATCGACGAACGTTTAATCAACCCCGACGGCTCCCTACTATTCCGAGTAACCATCAACGGAGTCACCGGATGGCGCCTCTGCGAACGAATATTGGCCTAAGCTCGCTTTCTTGCTGTCCAATTTCTATTAAAGGTTCCTTTGTTCCCTAAGTCCAACTACTAAACTGGGGGATATTATGAAGGGCCTTGAGCATCTGGATTCTGCCTAATAAAAAACATTTATTTTCATTGCAATTCTAGAGCGGCCGCTTCGAGCATGCTCGAACGCTGATCTCA... | [
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0.163,
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1,
-1,
-1,
-1,
0.342,
0.59,
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... | [
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606,
607,
608,
609,
610,
611,
612,
613,
614,
615,
616,
617,
618,
619,
6... | mRNA | Leppek, 2021, Nluc mRNA DMS in vitro |
Leppek, 2021, Nluc mRNA DMS in vitro | GGGACATTTGCTTCTGACACAACTGTGTTCACTAGCAACCTCAAACAGACACCATGTGGCTGGTTTCCCTCGCGATAGTAACCGCTTGCGCAGGCGCCATGGCCGTGTACCCGTATGACGTCCCCGATTATGCAGGCTACCCGTACGATGTGCCGGATTACGCGGGGTCATACCCCTATGACGTTCCAGATTATGCCGGCTCTGGCGTCTTCACCCTCGAAGACTTCGTGGGTGACTGGCGCCAGACCGCCGGCTATAATCTGGACCAGGTTCTGGAGCAGGGAGGAGTGTCCTCCCTGTTCCAGAACCTGGGCGTCAGT... | [
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0.015,
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0.295,
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0.095,
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0.064,
0.17400000000000002,
0.41400000000000003,
1,
... | [
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39,
40,
41,
42,
43,
44,
45,
46,
47,
48,
49,
50,
51,
52,
53,
54... | mRNA | Leppek, 2021, Nluc mRNA DMS in vitro |
Leppek, 2021, Nluc mRNA DMS in vitro | AAGAAGATTACCGTCACTGGGACCCTCTGGAATGGTAACAAGATTATCGATGAGAGGCTGATCAACCCGGACGGTAGCCTGCTTTTTCGGGTGACGATCAACGGGGTCACGGGCTGGCGCCTGTGCGAGCGGATACTTGCGTGAGCTCGCTTTCTTGCTGTCCAATTTCTATTAAAGGTTCCTTTGTTCCCTAAGTCCAACTACTAAACTGGGGGATATTATGAAGGGCCTTGAGCATCTGGATTCTGCCTAATAAAAAACATTTATTTTCATTGCAATTCTAGAGCGGCCGCTTCGAGCAACCTCGAACGCTGATCTCA... | [
0.065,
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0.937,
0.871,
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0.98,
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0.059000000000000004,
0.016,
0.019,
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0.017,
0.336,
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0.099,
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0.014,
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0.14400000000000002,
-1,
-1,
-1,
0.094,
0.068,
-1,
-1,
-1,
-1,
0.0... | [
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606,
607,
608,
609,
610,
611,
612,
613,
614,
615,
616,
617,
618,
619,
6... | mRNA | Leppek, 2021, Nluc mRNA DMS in vitro |
Mauger,2019 U_L1 nLUC mRNA | GGGAAATAAGAGAGAAAAGAAGAGTAAGAAGAAATATAAGAGCCACCATGGAGGACGCGAAAAACATCAAAAAAGGGCCTGCGCCTTTTTACCCTCTGGAGGACGGGACCGCGGGGGAGCAACTGCACAAAGCGATGAAAAGGTACGCGCTGGTACCTGGGACCATCGCGTTTACCGACGCGCACATCGAGGTAGACATCACCTACGCGGAGTACTTTGAGATGAGCGTAAGGCTGGCGGAGGCGATGAAAAGGTACGGGCTGAACACCAACCACAGGATCGTAGTATGCAGCGAGAACAGCCTGCAATTTTTTATGCCT... | [
null,
null,
null,
0.29229000000000005,
-0.084315,
0.602293,
0.605887,
-0.010903999999999999,
0.5318689999999999,
0.7612909999999999,
0.401072,
0.699579,
0.333097,
0.403541,
0.34817499999999996,
0.9335559999999999,
1.475144,
0.804325,
1.163581,
0.828742,
0.858309,
0.63666099... | [
0,
1,
2,
3,
4,
5,
6,
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8,
9,
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39,
40,
41,
42,
43,
44,
45,
46,
47,
48,
49,
50,
51,
52,
53,
54... | mRNA | Mauger,2019 |
Mauger,2019 U_L1 nLUC mRNA | AACGAGTACGACTTTGTACCTGAGAGCTTTGACAGGGACAAAACCATCGCGCTGATCATGAACAGCAGCGGGAGCACCGGGCTGCCTAAAGGGGTAGCGCTGCCTCACAGGACCGCGTGCGTAAGGTTTAGCCACGCGAGGGACCCTATCTTTGGGAACCAAATCATCCCTGACACCGCGATCCTGAGCGTAGTACCTTTTCACCACGGGTTTGGGATGTTTACCACCCTGGGGTACCTGATCTGCGGGTTTAGGGTAGTACTGATGTACAGGTTTGAGGAGGAGCTGTTTCTGAGGAGCCTGCAAGACTACAAAATCCA... | [
1.738909,
1.111816,
0.779416,
0.953915,
0.592935,
0.107278,
0.412263,
0.8383600000000001,
0.494892,
0.27275499999999997,
1.057711,
0.193954,
0.062070999999999994,
0.34056000000000003,
0.39357699999999995,
0.332245,
0.108446,
0.19275799999999998,
-0.064944,
-0.003065,
-0.05920... | [
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606,
607,
608,
609,
610,
611,
612,
613,
614,
615,
616,
617,
618,
619,
6... | mRNA | Mauger,2019 |
Mauger,2019 U_L1 nLUC mRNA | TTTTGAGGCGAAAGTAGTAGACCTGGACACCGGGAAAACCCTGGGGGTAAACCAAAGGGGGGAGCTGTGCGTAAGGGGGCCTATGATCATGAGCGGGTACGTAAACAACCCTGAGGCGACCAACGCGCTGATCGACAAAGACGGGTGGCTGCACAGCGGGGACATCGCGTACTGGGACGAGGACGAGCACTTTTTTATCGTAGACAGGCTGAAAAGCCTGATCAAATACAAAGGGTACCAAGTAGCGCCTGCGGAGCTGGAGAGCATCCTGCTGCAACACCCTAACATCTTTGACGCGGGGGTAGCGGGGCTGCCTGACG... | [
0.21901299999999999,
0.124099,
0.632153,
0.253921,
1.093084,
0.686558,
0.344455,
0.167449,
0.40448399999999995,
0.441459,
0.6751969999999999,
0.935533,
1.079784,
0.7869700000000001,
0.7518539999999999,
0.374398,
0.632254,
0.24085399999999998,
0.8037489999999999,
0.3083889999999... | [
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1177,
1178,
1179,
1180,
1181,
1182,
1183,
1184,
1185,
1186,
1187,
1188,
1189... | mRNA | Mauger,2019 |
Mauger,2019 U_L1 nLUC mRNA | TGCTTCTTGCCCCTTGGGCCTCCCCCCAGCCCCTCCTCCCCTTCCTGCACCCGTACCCCCGTGGTCTTTGAATAAAGTCTGAGTGGGCGG | [
1.230776,
1.141336,
-0.0049949999999999994,
0.507566,
0.285105,
0.20268799999999998,
0.30272000000000004,
0.26306599999999997,
0.039001999999999995,
0.142226,
-0.075288,
0.0005300000000000001,
-0.014221,
0.049661,
0.566074,
0.46546099999999996,
0.36514599999999997,
0.031677,
-0.0... | [
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1753,
1754,
1755,
1756,
1757,
1758,
1759,
1760,
1761,
1762,
1763,
1764... | mRNA | Mauger,2019 |
Mauger,2019 U_L10 nLUC mRNA | GGGAAATAAGAGAGAAAAGAAGAGTAAGAAGAAATATAAGAGCCACCATGGAGGACGCAAAGAATATAAAGAAGGGACCCGCACCCTTCTATCCCCTAGAGGACGGAACAGCAGGAGAGCAGCTACACAAGGCAATGAAGAGATATGCACTAGTACCCGGAACAATAGCATTCACAGACGCACACATAGAGGTAGACATAACATATGCAGAGTATTTCGAGATGTCTGTAAGACTAGCAGAGGCAATGAAGAGATATGGACTAAATACAAATCACAGAATAGTAGTATGCTCTGAGAATTCTCTACAGTTCTTCATGCCC... | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
0.316897,
0.630027,
0.331104,
2.418702,
4.909483,
0.8622719999999999,
0.9651919999999999,
1.007317,
1.420403,
1.737846,
1.005105,
1.072939,
1.044108,
0.894928,
1.8649229999999999,
1.1744539999999999,
0.640134,
... | [
0,
1,
2,
3,
4,
5,
6,
7,
8,
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39,
40,
41,
42,
43,
44,
45,
46,
47,
48,
49,
50,
51,
52,
53,
54... | mRNA | Mauger,2019 |
Mauger,2019 U_L10 nLUC mRNA | AATGAGTATGACTTCGTACCCGAGTCTTTCGACAGAGACAAGACAATAGCACTAATAATGAATTCTTCTGGATCTACAGGACTACCCAAGGGAGTAGCACTACCCCACAGAACAGCATGCGTAAGATTCTCTCACGCAAGAGACCCCATATTCGGAAATCAGATAATACCCGACACAGCAATACTATCTGTAGTACCCTTCCACCACGGATTCGGAATGTTCACAACACTAGGATATCTAATATGCGGATTCAGAGTAGTACTAATGTATAGATTCGAGGAGGAGCTATTCCTAAGATCTCTACAGGACTATAAGATACA... | [
1.058946,
0.7725719999999999,
-0.334233,
0.230048,
0.005704,
0.229896,
0.687974,
0.626925,
-0.328314,
0.22397799999999998,
0.27394399999999997,
-0.30910099999999996,
0.838961,
0.392947,
1.967269,
0.606605,
0.450493,
0.313786,
-0.128225,
0.056766,
-0.07636699999999999,
0.163... | [
575,
576,
577,
578,
579,
580,
581,
582,
583,
584,
585,
586,
587,
588,
589,
590,
591,
592,
593,
594,
595,
596,
597,
598,
599,
600,
601,
602,
603,
604,
605,
606,
607,
608,
609,
610,
611,
612,
613,
614,
615,
616,
617,
618,
619,
6... | mRNA | Mauger,2019 |
Mauger,2019 U_L10 nLUC mRNA | TGCTTCTTGCCCCTTGGGCCTCCCCCCAGCCCCTCCTCCCCTTCCTGCACCCGTACCCCCGTGGTCTTTGAATAAAGTCTGAGTGGGCGG | [
0.642999,
0.611047,
-0.076273,
-0.044705999999999996,
0.36339299999999997,
-0.19969299999999998,
-0.082465,
-0.5488689999999999,
-0.14071,
-0.14879499999999998,
-1.136075,
-0.237498,
-1.0872600000000001,
null,
0.10577199999999999,
0.028832999999999998,
0.15989699999999998,
0.038481... | [
1725,
1726,
1727,
1728,
1729,
1730,
1731,
1732,
1733,
1734,
1735,
1736,
1737,
1738,
1739,
1740,
1741,
1742,
1743,
1744,
1745,
1746,
1747,
1748,
1749,
1750,
1751,
1752,
1753,
1754,
1755,
1756,
1757,
1758,
1759,
1760,
1761,
1762,
1763,
1764... | mRNA | Mauger,2019 |
Mauger,2019 U_L10 nLUC mRNA | CTTCGAGGCAAAGGTAGTAGACCTAGACACAGGAAAGACACTAGGAGTAAATCAGAGAGGAGAGCTATGCGTAAGAGGACCCATGATAATGTCTGGATATGTAAATAATCCCGAGGCAACAAATGCACTAATAGACAAGGACGGATGGCTACACTCTGGAGACATAGCATATTGGGACGAGGACGAGCACTTCTTCATAGTAGACAGACTAAAGTCTCTAATAAAGTATAAGGGATATCAGGTAGCACCCGCAGAGCTAGAGTCTATACTACTACAGCACCCCAATATATTCGACGCAGGAGTAGCAGGACTACCCGACG... | [
-0.049826999999999996,
0.289722,
0.045736,
0.278948,
0.177258,
1.111592,
0.441351,
0.154932,
0.127496,
0.7948379999999999,
0.7593209999999999,
1.037402,
0.6510119999999999,
0.200432,
0.226265,
0.458513,
0.618416,
0.22397799999999998,
0.7524529999999999,
0.393835,
0.513628,
... | [
1150,
1151,
1152,
1153,
1154,
1155,
1156,
1157,
1158,
1159,
1160,
1161,
1162,
1163,
1164,
1165,
1166,
1167,
1168,
1169,
1170,
1171,
1172,
1173,
1174,
1175,
1176,
1177,
1178,
1179,
1180,
1181,
1182,
1183,
1184,
1185,
1186,
1187,
1188,
1189... | mRNA | Mauger,2019 |
Mauger,2019 U_L11 nLUC mRNA | AATGAATACGATTTCGTCCCAGAATCGTTCGATCGAGATAAGACAATAGCGCTCATAATGAATTCGTCGGGCTCGACAGGCCTCCCAAAGGGCGTCGCGCTCCCACATCGAACAGCGTGTGTCCGATTCTCGCATGCGCGAGATCCAATATTCGGCAATCAGATAATACCAGATACAGCGATACTCTCGGTCGTCCCATTCCATCATGGCTTCGGCATGTTCACAACACTCGGCTACCTCATATGTGGCTTCCGAGTCGTCCTCATGTACCGATTCGAAGAAGAACTCTTCCTCCGATCGCTCCAGGATTACAAGATACA... | [
1.253579,
1.417031,
-0.09106399999999999,
0.9781979999999999,
0.912306,
0.7892049999999999,
0.36058199999999996,
0.7545569999999999,
0.399091,
0.6460819999999999,
0.162512,
0.047625999999999995,
0.077238,
0.22647199999999998,
0.745201,
1.980271,
0.671349,
0.004245,
0.421224999999... | [
575,
576,
577,
578,
579,
580,
581,
582,
583,
584,
585,
586,
587,
588,
589,
590,
591,
592,
593,
594,
595,
596,
597,
598,
599,
600,
601,
602,
603,
604,
605,
606,
607,
608,
609,
610,
611,
612,
613,
614,
615,
616,
617,
618,
619,
6... | mRNA | Mauger,2019 |
Mauger,2019 U_L11 nLUC mRNA | GGGAAATAAGAGAGAAAAGAAGAGTAAGAAGAAATATAAGAGCCACCATGGAAGATGCGAAGAATATAAAGAAGGGCCCAGCGCCATTCTACCCACTCGAAGATGGCACAGCGGGCGAACAGCTCCATAAGGCGATGAAGCGATACGCGCTCGTCCCAGGCACAATAGCGTTCACAGATGCGCATATAGAAGTCGATATAACATACGCGGAATACTTCGAAATGTCGGTCCGACTCGCGGAAGCGATGAAGCGATACGGCCTCAATACAAATCATCGAATAGTCGTCTGTTCGGAAAATTCGCTCCAGTTCTTCATGCCA... | [
null,
null,
null,
null,
null,
null,
0,
0,
null,
null,
null,
null,
-0.365648,
null,
null,
0.11377599999999999,
0.602753,
0.63399,
0.546024,
0.435815,
0.789446,
0.278152,
0.48662000000000005,
0.28667899999999996,
0.59328,
0.102757,
1.271518,
0.538688,
0.421376,
... | [
0,
1,
2,
3,
4,
5,
6,
7,
8,
9,
10,
11,
12,
13,
14,
15,
16,
17,
18,
19,
20,
21,
22,
23,
24,
25,
26,
27,
28,
29,
30,
31,
32,
33,
34,
35,
36,
37,
38,
39,
40,
41,
42,
43,
44,
45,
46,
47,
48,
49,
50,
51,
52,
53,
54... | mRNA | Mauger,2019 |
Mauger,2019 U_L11 nLUC mRNA | TGCTTCTTGCCCCTTGGGCCTCCCCCCAGCCCCTCCTCCCCTTCCTGCACCCGTACCCCCGTGGTCTTTGAATAAAGTCTGAGTGGGCGG | [
0.399117,
0.113567,
-0.070031,
-0.030586,
0.006784999999999999,
-0.17205299999999998,
-0.10671599999999999,
-0.339447,
-0.005859,
-0.098201,
-0.153756,
0.067352,
-0.035016,
0.233711,
0.210372,
0.095839,
0.020583,
-0.256054,
0.092973,
0.31183000000000005,
0.25335399999999997,
... | [
1725,
1726,
1727,
1728,
1729,
1730,
1731,
1732,
1733,
1734,
1735,
1736,
1737,
1738,
1739,
1740,
1741,
1742,
1743,
1744,
1745,
1746,
1747,
1748,
1749,
1750,
1751,
1752,
1753,
1754,
1755,
1756,
1757,
1758,
1759,
1760,
1761,
1762,
1763,
1764... | mRNA | Mauger,2019 |
Mauger,2019 U_L11 nLUC mRNA | CTTCGAAGCGAAGGTCGTCGATCTCGATACAGGCAAGACACTCGGCGTCAATCAGCGAGGCGAACTCTGTGTCCGAGGCCCAATGATAATGTCGGGCTACGTCAATAATCCAGAAGCGACAAATGCGCTCATAGATAAGGATGGCTGGCTCCATTCGGGCGATATAGCGTACTGGGATGAAGATGAACATTTCTTCATAGTCGATCGACTCAAGTCGCTCATAAAGTACAAGGGCTACCAGGTCGCGCCAGCGGAACTCGAATCGATACTCCTCCAGCATCCAAATATATTCGATGCGGGCGTCGCGGGCCTCCCAGATG... | [
-0.169321,
0.44293499999999997,
0.362766,
1.057169,
0.824097,
0.9808429999999999,
0.74614,
0.400513,
0.952113,
0.394788,
0.7246159999999999,
0.9258029999999999,
0.40483,
0.259924,
-0.065743,
-0.12022899999999999,
0.327866,
-0.054632,
-0.074917,
0.151283,
0.494851,
-0.031000... | [
1150,
1151,
1152,
1153,
1154,
1155,
1156,
1157,
1158,
1159,
1160,
1161,
1162,
1163,
1164,
1165,
1166,
1167,
1168,
1169,
1170,
1171,
1172,
1173,
1174,
1175,
1176,
1177,
1178,
1179,
1180,
1181,
1182,
1183,
1184,
1185,
1186,
1187,
1188,
1189... | mRNA | Mauger,2019 |
Mauger,2019 U_L12 nLUC mRNA | TGCTTCTTGCCCCTTGGGCCTCCCCCCAGCCCCTCCTCCCCTTCCTGCACCCGTACCCCCGTGGTCTTTGAATAAAGTCTGAGTGGGCGG | [
-0.268487,
0.524488,
-0.14521599999999998,
0.126228,
0.447382,
-0.021863,
-0.18768,
0.236896,
0.017025,
-0.545153,
-0.867374,
-0.09585,
0.484811,
-0.004359,
0.36003199999999996,
0.479191,
0.242423,
-0.055271,
0.169784,
-0.422373,
0.48369000000000006,
0.387249,
-0.398563,
... | [
1725,
1726,
1727,
1728,
1729,
1730,
1731,
1732,
1733,
1734,
1735,
1736,
1737,
1738,
1739,
1740,
1741,
1742,
1743,
1744,
1745,
1746,
1747,
1748,
1749,
1750,
1751,
1752,
1753,
1754,
1755,
1756,
1757,
1758,
1759,
1760,
1761,
1762,
1763,
1764... | mRNA | Mauger,2019 |
Mauger,2019 U_L12 nLUC mRNA | TTTTGAGGCTAAGGTCGTCGACCTCGACACAGGAAAGACACTCGGAGTCAACCAGAGGGGAGAGCTCTGCGTCAGGGGACCCATGATCATGTCCGGATACGTCAACAACCCCGAGGCTACAAACGCTCTCATCGACAAGGACGGATGGCTCCACTCCGGAGACATCGCTTACTGGGACGAGGACGAGCACTTTTTTATCGTCGACAGGCTCAAGTCCCTCATCAAGTACAAGGGATACCAGGTCGCTCCCGCTGAGCTCGAGTCCATCCTCCTCCAGCACCCCAACATCTTTGACGCTGGAGTCGCTGGACTCCCCGACG... | [
0.501706,
0.8293619999999999,
0.334555,
-0.014553,
0.132461,
0.38612799999999997,
-0.208229,
-0.073463,
0.189265,
-0.23418599999999998,
0.6505329999999999,
2.055252,
0.9975149999999999,
0.173517,
0.051761999999999996,
0.234424,
0.24714599999999998,
-0.20188299999999998,
0.2187029... | [
1150,
1151,
1152,
1153,
1154,
1155,
1156,
1157,
1158,
1159,
1160,
1161,
1162,
1163,
1164,
1165,
1166,
1167,
1168,
1169,
1170,
1171,
1172,
1173,
1174,
1175,
1176,
1177,
1178,
1179,
1180,
1181,
1182,
1183,
1184,
1185,
1186,
1187,
1188,
1189... | mRNA | Mauger,2019 |
Mauger,2019 U_L12 nLUC mRNA | AACGAGTACGACTTTGTCCCCGAGTCCTTTGACAGGGACAAGACAATCGCTCTCATCATGAACTCCTCCGGATCCACAGGACTCCCCAAGGGAGTCGCTCTCCCCCACAGGACAGCTTGCGTCAGGTTTTCCCACGCTAGGGACCCCATCTTTGGAAACCAGATCATCCCCGACACAGCTATCCTCTCCGTCGTCCCCTTTCACCACGGATTTGGAATGTTTACAACACTCGGATACCTCATCTGCGGATTTAGGGTCGTCCTCATGTACAGGTTTGAGGAGGAGCTCTTTCTCAGGTCCCTCCAGGACTACAAGATCCA... | [
1.590452,
1.376008,
0.634933,
0.194935,
0.234586,
-0.23418000000000003,
0.5360349999999999,
0.489382,
0.10958799999999999,
0.071118,
0.32916599999999996,
-0.13938,
0.089087,
0.22181599999999999,
0.351582,
0.170268,
-0.044856,
-0.14582599999999998,
-0.111686,
0.043981,
-0.0094... | [
575,
576,
577,
578,
579,
580,
581,
582,
583,
584,
585,
586,
587,
588,
589,
590,
591,
592,
593,
594,
595,
596,
597,
598,
599,
600,
601,
602,
603,
604,
605,
606,
607,
608,
609,
610,
611,
612,
613,
614,
615,
616,
617,
618,
619,
6... | mRNA | Mauger,2019 |
Mauger,2019 U_L12 nLUC mRNA | GGGAAATAAGAGAGAAAAGAAGAGTAAGAAGAAATATAAGAGCCACCATGGAGGACGCTAAGAACATCAAGAAGGGACCCGCTCCCTTTTACCCCCTCGAGGACGGAACAGCTGGAGAGCAGCTCCACAAGGCTATGAAGAGGTACGCTCTCGTCCCCGGAACAATCGCTTTTACAGACGCTCACATCGAGGTCGACATCACATACGCTGAGTACTTTGAGATGTCCGTCAGGCTCGCTGAGGCTATGAAGAGGTACGGACTCAACACAAACCACAGGATCGTCGTCTGCTCCGAGAACTCCCTCCAGTTTTTTATGCCC... | [
null,
null,
null,
null,
null,
null,
-0.342985,
null,
null,
0.559896,
0.903191,
-0.022012999999999998,
null,
0.166678,
0.22183000000000003,
1.190702,
2.547414,
1.8310389999999999,
1.360343,
0.57118,
1.05258,
0.490815,
0.170544,
0.820569,
0.8637269999999999,
1.087075,... | [
0,
1,
2,
3,
4,
5,
6,
7,
8,
9,
10,
11,
12,
13,
14,
15,
16,
17,
18,
19,
20,
21,
22,
23,
24,
25,
26,
27,
28,
29,
30,
31,
32,
33,
34,
35,
36,
37,
38,
39,
40,
41,
42,
43,
44,
45,
46,
47,
48,
49,
50,
51,
52,
53,
54... | mRNA | Mauger,2019 |
Mauger,2019 U_L13 nLUC mRNA | TGCTTCTTGCCCCTTGGGCCTCCCCCCAGCCCCTCCTCCCCTTCCTGCACCCGTACCCCCGTGGTCTTTGAATAAAGTCTGAGTGGGCGG | [
0.8719509999999999,
0.6121559999999999,
-0.229991,
0.30203399999999997,
0.709031,
0.264778,
-0.396402,
0.171597,
-0.020172,
0.066638,
-0.212975,
-0.132151,
-0.023437,
-0.14488299999999998,
0.112146,
0.31273599999999996,
0.07289899999999999,
0.038845,
-0.135302,
0.11337399999999... | [
1725,
1726,
1727,
1728,
1729,
1730,
1731,
1732,
1733,
1734,
1735,
1736,
1737,
1738,
1739,
1740,
1741,
1742,
1743,
1744,
1745,
1746,
1747,
1748,
1749,
1750,
1751,
1752,
1753,
1754,
1755,
1756,
1757,
1758,
1759,
1760,
1761,
1762,
1763,
1764... | mRNA | Mauger,2019 |
Mauger,2019 U_L13 nLUC mRNA | GGGAAATAAGAGAGAAAAGAAGAGTAAGAAGAAATATAAGAGCCACCATGGAGGATGCAAAAAATATCAAAAAAGGCCCGGCACCGTTCTACCCGTTGGAGGATGGCACGGCAGGCGAGCAGTTGCACAAAGCAATGAAAAGATACGCATTGGTGCCGGGCACGATCGCATTCACGGATGCACACATCGAGGTGGATATCACGTACGCAGAGTACTTCGAGATGAGCGTGAGATTGGCAGAGGCAATGAAAAGATACGGCTTGAATACGAATCACAGAATCGTGGTGTGTAGCGAGAATAGCTTGCAGTTCTTCATGCCG... | [
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
null,
1.067542,
1.7341929999999999,
0.9360839999999999,
1.726585,
1.3651,
0.746239,
0.40909199999999996,
0.401549,
0.418243,
1.202895,
12.404206,
0.698523,
1.228486,
0.5129929999999999... | [
0,
1,
2,
3,
4,
5,
6,
7,
8,
9,
10,
11,
12,
13,
14,
15,
16,
17,
18,
19,
20,
21,
22,
23,
24,
25,
26,
27,
28,
29,
30,
31,
32,
33,
34,
35,
36,
37,
38,
39,
40,
41,
42,
43,
44,
45,
46,
47,
48,
49,
50,
51,
52,
53,
54... | mRNA | Mauger,2019 |
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